RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 MCAMP43121 646 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 ZBTB8OSQ8IWT0 167 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CTAGE3PQ8IX95 158 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCT6BQ92526 530 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 KLHL14Q9P2G3 628 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CRCPO75575 148 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 AFPP02771 609 aaKnown RBP16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CLNS1AP54105 237 aaKnown RBP16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 ZBED6P86452 979 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 PPP2R5DQ14738 602 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 NAA35Q5VZE5 725 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CYP2D7A0A087X1C5 515 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 GMNNO75496 209 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 TROVE2P10155 538 aaKnown RBP eCLIP16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 GAP43P17677 238 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 PHBP35232 272 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 RASSF2P50749 326 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 HADHQ16836 314 aaKnown RBP16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCDC13Q8IYE1 715 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 PGBD1Q96JS3 809 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 RESP18Q5W5W9 173 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCDC170Q8IYT3 715 aa16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 RPAP1Q9BWH6 1393 aaPredicted RBP16.75■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCDC151A5D8V7 595 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 THAP12O43422 761 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 NOL3O60936 208 aaKnown RBP16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 PSMC2P35998 433 aaKnown RBP16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 EPHB4P54760 987 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 TBC1D31Q96DN5 1066 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 MLXIPQ9HAP2 919 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCPG1Q9ULG6 757 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 PASKQ96RG2 1323 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 ATF7P17544 494 aaPredicted RBP16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 ARL6IP4Q66PJ3 421 aaKnown RBP16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 KCTD1Q719H9 257 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCDC117Q8IWD4 279 aaPredicted RBP16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 AFAP1L2Q8N4X5 818 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 C3P01024 1663 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 USP17L8P0C7I0 530 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 CCDC125Q86Z20 511 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 NOD1Q9Y239 953 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 STAM2O75886 525 aa16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 NSFP46459 744 aaKnown RBP16.74■□□□□ 0.27
ARHGEF40-202ENST00000553709 ATF2P15336 505 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 UHMK1Q8TAS1 419 aaKnown RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 ATP2A3Q93084 1043 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 PPP1R12CQ9BZL4 782 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 SERPINB13Q9UIV8 391 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 NDUFA10O95299 355 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 TNNC2P02585 160 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 PLCG1P19174 1290 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 FAM186BQ8IYM0 893 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 BBOF1Q8ND07 529 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 PPEF1O14829 653 aaPredicted RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 HEXIM1O94992 359 aaKnown RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 CACNB1Q02641 598 aaPredicted RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 KCTD16Q68DU8 428 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 MFAP3P55082 362 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 DYNLL2Q96FJ2 89 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 DDX23Q9BUQ8 820 aaKnown RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 PARD6BQ9BYG5 372 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 VCX3BQ9H321 246 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 ZNF408Q9H9D4 720 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 NHEJ1Q9H9Q4 299 aaPredicted RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 ZMYND10O75800 440 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 SLC16A2P36021 539 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 SMCR8Q8TEV9 937 aaPredicted RBP16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 POMGNT1Q8WZA1 660 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 COA7Q96BR5 231 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 KANSL2Q9H9L4 492 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 FAM114A2Q9NRY5 505 aa16.73■□□□□ 0.27
ARHGEF40-202ENST00000553709 MECOMQ03112 1051 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 USP17L2Q6R6M4 530 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 METTL13Q8N6R0 699 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 RUNDC3BQ96NL0 473 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 YARSP54577 528 aaKnown RBP16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 KRT81Q14533 505 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 MESDQ14696 234 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 KMT5BQ4FZB7 885 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 TMC4Q7Z404 712 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 SPICE1Q8N0Z3 855 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 NLGN1Q8N2Q7 840 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 NT5C1BQ96P26 610 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 EPB41L5Q9HCM4 733 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 GJB4Q9NTQ9 266 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 RNF14Q9UBS8 474 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 PTK2Q05397 1052 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 TCP11X2Q5H9J9 407 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 DCAF15Q66K64 600 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 STAG1Q8WVM7 1258 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 JRKLQ9Y4A0 524 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 PTPREP23469 700 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 HOXA7P31268 230 aaPredicted RBP16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 CLCN6P51797 869 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 BPIFB4P59827 614 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 PSMD2Q13200 908 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 SEPT2Q15019 361 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 SLC17A8Q8NDX2 589 aa16.72■□□□□ 0.27
ARHGEF40-202ENST00000553709 CNKSR1Q969H4 720 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms