RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	CPE	P16870	476 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	ITK	Q08881	620 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	INPP5A	Q14642	412 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	WIPI1	Q5MNZ9	446 aa	Predicted RBP	5.11	□□□□□ -1.59
USP44-208	ENST00000552440	C1QTNF12	Q5T7M4	302 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	FYB2	Q5VWT5	728 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	ZNF354C	Q86Y25	554 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	TAB3	Q8N5C8	712 aa	Predicted RBP	5.11	□□□□□ -1.59
USP44-208	ENST00000552440	UBE2F	Q969M7	185 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	TIFA	Q96CG3	184 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	MPP4	Q96JB8	637 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	ELAC2	Q9BQ52	826 aa	Known RBP	5.11	□□□□□ -1.59
USP44-208	ENST00000552440	YIPF4	Q9BSR8	244 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	EPB41L4B	Q9H329	900 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	IPP	Q9Y573	584 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	NISCH	Q9Y2I1	1504 aa		5.11	□□□□□ -1.59
USP44-208	ENST00000552440	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	5.1	□□□□□ -1.59
USP44-208	ENST00000552440	CBX7	O95931	251 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	RBP3	P10745	1247 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	SERPINB3	P29508	390 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	GPSM2	P81274	684 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	TOMM20	Q15388	145 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	PUM3	Q15397	648 aa	Known RBP	5.1	□□□□□ -1.59
USP44-208	ENST00000552440	PDXDC1	Q6P996	788 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	MMS22L	Q6ZRQ5	1243 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	PRR23B	Q6ZRT6	265 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	EEPD1	Q7L9B9	569 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	UBE3D	Q7Z6J8	389 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	AMIGO3	Q86WK7	504 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	MRPL41	Q8IXM3	137 aa	Known RBP	5.1	□□□□□ -1.59
USP44-208	ENST00000552440	VPS37A	Q8NEZ2	397 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	TSPAN18	Q96SJ8	248 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	DCP1A	Q9NPI6	582 aa	Predicted RBP	5.1	□□□□□ -1.59
USP44-208	ENST00000552440	PRDM11	Q9NQV5	511 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	SLC5A4	Q9NY91	659 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	KCNH3	Q9ULD8	1083 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	PHLDB1	Q86UU1	1377 aa		5.1	□□□□□ -1.59
USP44-208	ENST00000552440	ADCY3	O60266	1144 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	NBN	O60934	754 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	RFPL3	O75679	317 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	CT47B1	P0C2W7	299 aa	Predicted RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	FAM153B	P0C7A2	387 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	ACR	P10323	421 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	CFP	P27918	469 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	ZYX	Q15942	572 aa	Known RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	CXorf57	Q6NSI4	855 aa	Known RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	CASC1	Q6TDU7	716 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	ATXN2L	Q8WWM7	1075 aa	Known RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	JPH3	Q8WXH2	748 aa	Predicted RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	MYLIP	Q8WY64	445 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	TTC14	Q96N46	770 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	KRTAP4-9	Q9BYQ8	210 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	RHOBTB2	Q9BYZ6	727 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	CCDC8	Q9H0W5	538 aa	Predicted RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	NSUN3	Q9H649	340 aa	Known RBP	5.09	□□□□□ -1.59
USP44-208	ENST00000552440	PLCB1	Q9NQ66	1216 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	GPATCH2	Q9NW75	528 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	SLAMF8	Q9P0V8	285 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	ZSWIM5	Q9P217	1185 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	ADAM30	Q9UKF2	790 aa		5.09	□□□□□ -1.59
USP44-208	ENST00000552440	ANO9	A1A5B4	782 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	TCAF2	A6NFQ2	919 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	ABLIM3	O94929	683 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	ZSCAN22	P10073	491 aa	Predicted RBP	5.09	□□□□□ -1.6
USP44-208	ENST00000552440	SRF	P11831	508 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	ZSCAN20	P17040	1043 aa	Predicted RBP	5.09	□□□□□ -1.6
USP44-208	ENST00000552440	GRK4	P32298	578 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	TCIRG1	Q13488	830 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	CBX2	Q14781	532 aa	Predicted RBP	5.09	□□□□□ -1.6
USP44-208	ENST00000552440	CDC37	Q16543	378 aa	Predicted RBP	5.09	□□□□□ -1.6
USP44-208	ENST00000552440	LONRF2	Q1L5Z9	754 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	PRAMEF13	Q5VWM6	474 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	CIAPIN1	Q6FI81	312 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	UNC5A	Q6ZN44	842 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	TOGARAM2	Q6ZUX3	1019 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	STRA8	Q7Z7C7	330 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	LILRA2	Q8N149	483 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	OXR1	Q8N573	874 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	SPATA9	Q9BWV2	254 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	5.09	□□□□□ -1.6
USP44-208	ENST00000552440	FBRS	Q9HAH7	460 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	TMEM59L	Q9UK28	342 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.09	□□□□□ -1.6
USP44-208	ENST00000552440	SLC45A1	Q9Y2W3	748 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	CORIN	Q9Y5Q5	1042 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	SLC12A7	Q9Y666	1083 aa		5.09	□□□□□ -1.6
USP44-208	ENST00000552440	CLSPN	Q9HAW4	1339 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	LTBP3	Q9NS15	1303 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	PRR33	A8MZF0	331 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	FIBP	O43427	364 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	CBFA2T2	O43439	604 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	PGR	P06401	933 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	PHKG2	P15735	406 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	TYRP1	P17643	537 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	GLDC	P23378	1020 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	DDIT3	P35638	169 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	NCAPH	Q15003	741 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	INTS3	Q68E01	1043 aa	Known RBP	5.08	□□□□□ -1.6
USP44-208	ENST00000552440	OVOS1	Q6IE37	1185 aa		5.08	□□□□□ -1.6
USP44-208	ENST00000552440	VHLL	Q6RSH7	139 aa		5.08	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms