RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 FAM207AQ9NSI2 230 aaPredicted RBP9.69□□□□□ -0.86
TDP1-204ENST00000545686 LOC102724428A0A0B4J2F2 783 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 ESYT2A0FGR8 921 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 hCG_1984214I3L0E3 225 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 EPHB6O15197 1021 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 CCNT1O60563 726 aaKnown RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 FXR2P51116 673 aaKnown RBP eCLIP9.68□□□□□ -0.86
TDP1-204ENST00000545686 GTF2A1P52655 376 aaPredicted RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 NAPAP54920 295 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 SIK1P57059 783 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 TTMPQ5BVD1 217 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 KDM7AQ6ZMT4 941 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 ZNF713Q8N859 430 aaPredicted RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 TSEN2Q8NCE0 465 aaKnown RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 RIC8AQ9NPQ8 531 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 CEP72Q9P209 647 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 STRCQ7RTU9 1775 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 TSPY3P0CV98 308 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 TSPY8P0CW00 308 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 GUCY2CP25092 1073 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 PRDX5P30044 214 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 LETM2Q2VYF4 491 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 ERFEQ4G0M1 354 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 SLC10A5Q5PT55 438 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 KLHDC7AQ5VTJ3 777 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 LRRC55Q6ZSA7 311 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 RRAGAQ7L523 313 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 DZIP1Q86YF9 867 aaKnown RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 MICALL1Q8N3F8 863 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 EIF1ADQ8N9N8 165 aaKnown RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 DRC1Q96MC2 740 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 TSG101Q99816 390 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 MMRN2Q9H8L6 949 aa9.68□□□□□ -0.86
TDP1-204ENST00000545686 RBM12Q9NTZ6 932 aaKnown RBP9.68□□□□□ -0.86
TDP1-204ENST00000545686 CES2O00748 559 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 USP17L8P0C7I0 530 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 USP8P40818 1118 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SEPT2Q15019 361 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 TMEM266Q2M3C6 531 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SLC9C1Q4G0N8 1177 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 HGSNATQ68CP4 663 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.67□□□□□ -0.86
TDP1-204ENST00000545686 CACNA2D4Q7Z3S7 1137 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 IQCKQ8N0W5 287 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 WHAMMQ8TF30 809 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 LARP4BQ92615 738 aaKnown RBP9.67□□□□□ -0.86
TDP1-204ENST00000545686 EEF2KMTQ96G04 330 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 ZIM3Q96PE6 472 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 RAB34Q9BZG1 259 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 MKNK2Q9HBH9 465 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 ZNF287Q9HBT7 754 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SLC39A2Q9NP94 309 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 BLOC1S4Q9NUP1 217 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SNED1Q8TER0 1413 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 WTIPA6NIX2 430 aaPredicted RBP9.67□□□□□ -0.86
TDP1-204ENST00000545686 KLRF2D3W0D1 207 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SERPING1P05155 500 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 TECP42680 631 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SLC7A5Q01650 507 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 EHHADHQ08426 723 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 GRB10Q13322 594 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 ITPK1Q13572 414 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SWT1Q5T5J6 900 aaKnown RBP9.67□□□□□ -0.86
TDP1-204ENST00000545686 CFAP58Q5T655 872 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 C3orf67Q6ZVT6 689 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 CERS3Q8IU89 383 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 ARL8AQ96BM9 186 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 MTMR8Q96EF0 704 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 MTMR9Q96QG7 549 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 CEP89Q96ST8 783 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 TMEM47Q9BQJ4 181 aa9.67□□□□□ -0.86
TDP1-204ENST00000545686 SMCO2A6NFE2 343 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 MYMKA6NI61 221 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 ANKRD65E5RJM6 399 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 INPP5BP32019 993 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 SLC1A4P43007 532 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 MATR3P43243 847 aaKnown RBP eCLIP9.66□□□□□ -0.86
TDP1-204ENST00000545686 NAB2Q15742 525 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 SOGA3Q5TF21 947 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 MICALCLQ6ZW33 695 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 YTHDF3Q7Z739 585 aaKnown RBP9.66□□□□□ -0.86
TDP1-204ENST00000545686 ZNF444Q8N0Y2 327 aaPredicted RBP9.66□□□□□ -0.86
TDP1-204ENST00000545686 REXO1Q8N1G1 1221 aaKnown RBP9.66□□□□□ -0.86
TDP1-204ENST00000545686 CELF1Q92879 486 aaKnown RBP9.66□□□□□ -0.86
TDP1-204ENST00000545686 CDK5RAP3Q96JB5 506 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 SALL4Q9UJQ4 1053 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 GGA2Q9UJY4 613 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 PCDHGC5Q9Y5F6 944 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 USP17L3A6NCW0 530 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 USP17L4A6NCW7 530 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 HMGB1P1B2RPK0 211 aaPredicted RBP9.66□□□□□ -0.86
TDP1-204ENST00000545686 NDUFAB1O14561 156 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 NKRFO15226 690 aaKnown RBP eCLIP9.66□□□□□ -0.86
TDP1-204ENST00000545686 NCK2O43639 380 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 GNA14O95837 355 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 KLRK1P26718 216 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 CXCR5P32302 372 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 GSTO1P78417 241 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 RASSF7Q02833 373 aa9.66□□□□□ -0.86
TDP1-204ENST00000545686 PDIA5Q14554 519 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms