RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	KCNG4	Q8TDN1	519 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	OXER1	Q8TDS5	423 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	SPATA32	Q96LK8	384 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	AGBL1	Q96MI9	1066 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	TRERF1	Q96PN7	1200 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	SEMA6B	Q9H3T3	888 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	ACAD9	Q9H845	621 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	RNF146	Q9NTX7	359 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	RTEL1	Q9NZ71	1219 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	MORC2	Q9Y6X9	1032 aa	Predicted RBP	10.83	□□□□□ -0.68
YBX3-215	ENST00000544504		A0A0G2JMZ2	1700 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	ELP1	O95163	1332 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	TNFRSF10A	O00220	468 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	MEIS2	O14770	477 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	CFB	P00751	764 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	MCM4	P33991	863 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	PLA2G5	P39877	138 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	HSD17B4	P51659	736 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	USP11	P51784	963 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	STK38	Q15208	465 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	SF3A1	Q15459	793 aa	Known RBP	10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	TTC38	Q5R3I4	469 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	JAKMIP3	Q5VZ66	844 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	ANO1	Q5XXA6	986 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	NEK8	Q86SG6	692 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	TMEM87A	Q8NBN3	555 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	GPRC5A	Q8NFJ5	357 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	TRIB2	Q92519	343 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	PAGR1	Q9BTK6	254 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	SPATC1L	Q9H0A9	340 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	MROH8	Q9H579	483 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	MORF4L1	Q9UBU8	362 aa		10.82	□□□□□ -0.68
YBX3-215	ENST00000544504	GOLGA6L4	A6NEF3	574 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504		B4DLN1	442 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	LAD1	O00515	517 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	XRCC5	P13010	732 aa	Known RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	NASP	P49321	788 aa	Predicted RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	ERVK-9	P63128	1117 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	ERVK-24	P63145	666 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	UBE2S	Q16763	222 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	TJAP1	Q5JTD0	557 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	XRRA1	Q6P2D8	792 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	MOXD1	Q6UVY6	613 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	FOXD4L3	Q6VB84	417 aa	Predicted RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	RNF207	Q6ZRF8	634 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	CCAR1	Q8IX12	1150 aa	Known RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	TRMT44	Q8IYL2	757 aa	Known RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	CLEC4D	Q8WXI8	215 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	USP28	Q96RU2	1077 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	MPHOSPH6	Q99547	160 aa	Known RBP	10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	ANO3	Q9BYT9	981 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	RCOR1	Q9UKL0	485 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	MYH15	Q9Y2K3	1946 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	XIRP2	A4UGR9	3374 aa		10.81	□□□□□ -0.68
YBX3-215	ENST00000544504	COL11A1	P12107	1806 aa	Predicted RBP	10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	OPLAH	O14841	1288 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	FIBP	O43427	364 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	PPP6R2	O75170	966 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	FOSL2	P15408	326 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	SREBF1	P36956	1147 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	SLC39A14	Q15043	492 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	INF2	Q27J81	1249 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	LHX8	Q68G74	356 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	FAM173B	Q6P4H8	233 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	USP17L6P	Q6QN14	398 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	NSMF	Q6X4W1	530 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	RASGRP4	Q8TDF6	673 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	TBCK	Q8TEA7	893 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	LEO1	Q8WVC0	666 aa	Predicted RBP	10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	SOCS4	Q8WXH5	440 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	MYLIP	Q8WY64	445 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	FAM122A	Q96E09	287 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	HOMER2	Q9NSB8	354 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	BTBD7	Q9P203	1132 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	TFIP11	Q9UBB9	837 aa	Known RBP	10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	RBPJL	Q9UBG7	517 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	PRKAG2	Q9UGJ0	569 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	CNPY2	Q9Y2B0	182 aa		10.8	□□□□□ -0.68
YBX3-215	ENST00000544504	LOC102724159	A0A0B4J2E5	919 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	NFIB	O00712	420 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	SPTLC2	O15270	562 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	STRN	O43815	780 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	CYP3A4	P08684	503 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	CYP2B6	P20813	491 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	TOB1	P50616	345 aa	Predicted RBP	10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	RPS6	P62753	249 aa	Known RBP	10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	SMAD3	P84022	425 aa	Known RBP	10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	ARHGAP4	P98171	946 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	KCTD2	Q14681	263 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	PWP2	Q15269	919 aa	Known RBP	10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	MUM1L1	Q5H9M0	696 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	ARL6IP4	Q66PJ3	421 aa	Known RBP	10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	PPP4R3A	Q6IN85	833 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	NCAPG2	Q86XI2	1143 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	ANKRD35	Q8N283	1001 aa		10.79	□□□□□ -0.68
YBX3-215	ENST00000544504	LINC00301	Q8NCQ3	95 aa		10.79	□□□□□ -0.68

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