RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 B4DLN1 442 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 GH1P01241 217 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 MRPL12P52815 198 aaKnown RBP20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 MCMDC2Q4G0Z9 681 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 CNKSR3Q6P9H4 555 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 SEPT14Q6ZU15 432 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 TBC1D10CQ8IV04 446 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 CD320Q9NPF0 282 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 LMCD1Q9NZU5 365 aa20.9■□□□□ 0.94
CLSTN3-214ENST00000542663 CKBP12277 381 aa20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 CHST3Q7LGC8 479 aa20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 SYTL5Q8TDW5 730 aaPredicted RBP20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 UBA5Q9GZZ9 404 aa20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 SUGCTQ9HAC7 445 aa20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 GTF2IRD1Q9UHL9 959 aa20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 ARIH1Q9Y4X5 557 aaPredicted RBP20.89■□□□□ 0.93
CLSTN3-214ENST00000542663 NEDD4P46934 1319 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 GJB5O95377 273 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 PDE1AP54750 535 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 CDC37Q16543 378 aaPredicted RBP20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 TMEM31Q5JXX7 168 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 GPATCH4Q5T3I0 446 aaKnown RBP20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 TRAF7Q6Q0C0 670 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 MFSD6Q6ZSS7 791 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 ZKSCAN3Q9BRR0 538 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 ZBED2Q9BTP6 218 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 HDAC6Q9UBN7 1215 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 RALGAPA2Q2PPJ7 1873 aa20.88■□□□□ 0.93
CLSTN3-214ENST00000542663 CASTP20810 708 aaKnown RBP20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 ERVK-21P61565 698 aa20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 NMIQ13287 307 aaPredicted RBP20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 NSUN6Q8TEA1 469 aaKnown RBP20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 WNT8BQ93098 351 aa20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 MAF1Q9H063 256 aa20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 DDX41Q9UJV9 622 aaKnown RBP20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 MTUS1Q9ULD2 1270 aa20.87■□□□□ 0.93
CLSTN3-214ENST00000542663 ABCB11O95342 1321 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 LINC01553A4QN01 128 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 PARNO95453 639 aaKnown RBP20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 PCP11498 1178 aaKnown RBP20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 MBTPS1Q14703 1052 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 STXBP2Q15833 593 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 TRIM71Q2Q1W2 868 aaKnown RBP20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 ANKRD45Q5TZF3 282 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 RAD9AQ99638 391 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 HCN4Q9Y3Q4 1203 aa20.86■□□□□ 0.93
CLSTN3-214ENST00000542663 CCDC171Q6TFL3 1326 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 ABHD14A-ACY1A0A1B0GW23 586 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 FAM86C2PA6NEL3 165 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 HAS3O00219 553 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 GPR37L1O60883 481 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 PSEN2P49810 448 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 DGKDQ16760 1214 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 ADGRF4Q8IZF3 695 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 EMID1Q96A84 441 aaPredicted RBP20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 TGS1Q96RS0 853 aaKnown RBP20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 IWS1Q96ST2 819 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 RMDN3Q96TC7 470 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 ALG1Q9BT22 464 aa20.85■□□□□ 0.93
CLSTN3-214ENST00000542663 F2P00734 622 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 ZNF286BP0CG31 522 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 PTK7Q13308 1070 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 HIC1Q14526 733 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 MFSD10Q14728 455 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 ZNF618Q5T7W0 954 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 DGKHQ86XP1 1220 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 TICAM2Q86XR7 235 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 C7orf31Q8N865 590 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 PNMA1Q8ND90 353 aa20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 UBE2ZQ9H832 354 aaPredicted RBP20.84■□□□□ 0.93
CLSTN3-214ENST00000542663 PI4K2BG5E9Z4 385 aa20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 ZNF200P98182 395 aaPredicted RBP20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 MKRN4PQ13434 485 aaPredicted RBP20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 IKBKEQ14164 716 aa20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 KIAA0753Q2KHM9 967 aa20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 QRICH1Q2TAL8 776 aa20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 FAM117BQ6P1L5 589 aa20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 ESR2Q92731 530 aa20.83■□□□□ 0.93
CLSTN3-214ENST00000542663 OPLAHO14841 1288 aa20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 HOXD8P13378 290 aaPredicted RBP20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 EIF2AK2P19525 551 aaKnown RBP20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 MCF2L2Q86YR7 1114 aa20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 PPTC7Q8NI37 304 aa20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 KATNAL1Q9BW62 490 aa20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 RNF41Q9H4P4 317 aaPredicted RBP20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 PXMP2Q9NR77 195 aa20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 KAT6AQ92794 2004 aa20.82■□□□□ 0.92
CLSTN3-214ENST00000542663 BAZ2BQ9UIF8 2168 aaKnown RBP20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 EFCAB14O75071 495 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 EIF3JO75822 258 aaKnown RBP20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 RGS20O76081 388 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 NR3C2P08235 984 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 LEXMQ3ZCV2 418 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 ARHGEF16Q5VV41 709 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 FAM178BQ8IXR5 827 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 ANKS1AQ92625 1134 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 C17orf80Q9BSJ5 609 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms