RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 MRPS9P82933 396 aaKnown RBP21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 STK3Q13188 491 aa21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 TTLL4Q14679 1199 aa21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 PFKFB3Q16875 520 aaPredicted RBP21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 TRIM60Q495X7 471 aa21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 BARHL2Q9NY43 387 aa21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 ATP11BQ9Y2G3 1177 aa21.05■□□□□ 0.96
SNRPA1-203ENST00000540017 NKRFO15226 690 aaKnown RBP eCLIP21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 SCG2P13521 617 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 IFNAR1P17181 557 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 CCND2P30279 289 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 AK2P54819 239 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 C1orf53Q5VUE5 145 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 CXCL17Q6UXB2 119 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 OR6J1Q8NGC5 347 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 STARD7Q9NQZ5 370 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 DDX41Q9UJV9 622 aaKnown RBP21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 TPCN1Q9ULQ1 816 aa21.04■□□□□ 0.96
SNRPA1-203ENST00000540017 ADAMTS3O15072 1205 aa21.03■□□□□ 0.96
SNRPA1-203ENST00000540017 PPP1R18Q6NYC8 613 aa21.03■□□□□ 0.96
SNRPA1-203ENST00000540017 SLC26A6Q9BXS9 759 aa21.03■□□□□ 0.96
SNRPA1-203ENST00000540017 RIC8AQ9NPQ8 531 aa21.03■□□□□ 0.96
SNRPA1-203ENST00000540017 CEP290O15078 2479 aa21.03■□□□□ 0.96
SNRPA1-203ENST00000540017 SMCO2A6NFE2 343 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 hCG_1984214I3L0E3 225 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 TLE2Q04725 743 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 ARHGAP1Q07960 439 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 ZNF713Q8N859 430 aaPredicted RBP21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 GLT1D1Q96MS3 346 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 RNF26Q9BY78 433 aaPredicted RBP21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 RTEL1Q9NZ71 1219 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 MRVI1Q9Y6F6 885 aa21.02■□□□□ 0.96
SNRPA1-203ENST00000540017 ELP1O95163 1332 aa21.02■□□□□ 0.95
SNRPA1-203ENST00000540017 DTNBO60941 627 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 NEK4P51957 841 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 SP2Q02086 613 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 PCNX4Q63HM2 1172 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 VTI1AQ96AJ9 217 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 KIF2CQ99661 725 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 TMEM260Q9NX78 707 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 PCDHA6Q9UN73 950 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 PCDHA8Q9Y5H6 950 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 GRIN2DO15399 1336 aa21.01■□□□□ 0.95
SNRPA1-203ENST00000540017 A6NJR5 290 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 GH1P01241 217 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 CPT1AP50416 773 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 CDK7P50613 346 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 ADCY7P51828 1080 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 PSMC6P62333 389 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 SCRN1Q12765 414 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 SEMA3FQ13275 785 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 SH3RF1Q7Z6J0 888 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 AFG1LQ8WV93 481 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 PGBD1Q96JS3 809 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 INPP4AQ96PE3 977 aaPredicted RBP21■□□□□ 0.95
SNRPA1-203ENST00000540017 BCAS3Q9H6U6 928 aa21■□□□□ 0.95
SNRPA1-203ENST00000540017 ZEB2O60315 1214 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 SORBS3O60504 671 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 PFKFB2O60825 505 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 PQBP1O60828 265 aaKnown RBP20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 LARGE1O95461 756 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 MYL3P08590 195 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 CLK2P49760 499 aaKnown RBP20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 PURAQ00577 322 aaKnown RBP20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 CHRDL2Q6WN34 429 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 PDLIM7Q9NR12 457 aa20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 RBM27Q9P2N5 1060 aaKnown RBP20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 COLQQ9Y215 455 aaPredicted RBP20.99■□□□□ 0.95
SNRPA1-203ENST00000540017 A0A0U1RQG5 324 aaPredicted RBP20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 SPDYE3A6NKU9 549 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 ARVCFO00192 962 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 CPLX1O14810 134 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 CABYRO75952 493 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 UBA1P22314 1058 aaKnown RBP20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 AKAP17AQ02040 695 aaKnown RBP20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 SSRP1Q08945 709 aaKnown RBP20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 ANKRD33Q7Z3H0 272 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 SLC43A3Q8NBI5 491 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 ZMYND12Q9H0C1 365 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 SLKQ9H2G2 1235 aaPredicted RBP20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 PRO3102Q9H379 93 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 GTF3C3Q9Y5Q9 886 aa20.98■□□□□ 0.95
SNRPA1-203ENST00000540017 ESYT2A0FGR8 921 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 TRIM43BA6NCK2 446 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 SPATA31C2B4DYI2 1134 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 STAM2O75886 525 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 ICAM3P32942 547 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 FAAP100Q0VG06 881 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 ITGA7Q13683 1181 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 ANKRD1Q15327 319 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 ME3Q16798 604 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 CELF3Q5SZQ8 465 aaKnown RBP20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 MYSM1Q5VVJ2 828 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 XRRA1Q6P2D8 792 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 KCNV1Q6PIU1 500 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 DHX37Q8IY37 1157 aaKnown RBP20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 PPP1R13LQ8WUF5 828 aa20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 EMID1Q96A84 441 aaPredicted RBP20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 TRIM43Q96BQ3 446 aaPredicted RBP20.97■□□□□ 0.95
SNRPA1-203ENST00000540017 AIFM3Q96NN9 605 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms