RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IDEP14735 1019 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 SHMT1P34896 483 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 KIF5AQ12840 1032 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 HHIPL2Q6UWX4 724 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 PROM2Q8N271 834 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 CERS5Q8N5B7 392 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 MTMR8Q96EF0 704 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 CCDC17Q96LX7 622 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 PURBQ96QR8 312 aaKnown RBP23.61■■□□□ 1.37
VPS28-205ENST00000526204 SIK3Q9Y2K2 1263 aa23.61■■□□□ 1.37
VPS28-205ENST00000526204 PPP1R11O60927 126 aaPredicted RBP23.6■■□□□ 1.37
VPS28-205ENST00000526204 EIF3JO75822 258 aaKnown RBP23.6■■□□□ 1.37
VPS28-205ENST00000526204 TFRCP02786 760 aaKnown RBP23.6■■□□□ 1.37
VPS28-205ENST00000526204 MCM3P25205 808 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 VAV2P52735 878 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 CKAP4Q07065 602 aaKnown RBP23.6■■□□□ 1.37
VPS28-205ENST00000526204 NT5C3AQ9H0P0 336 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 PSTPIP2Q9H939 334 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 EP400Q96L91 3159 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 AFF2P51816 1311 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 ATP1A1P05023 1023 aaKnown RBP23.6■■□□□ 1.37
VPS28-205ENST00000526204 HMGB2P26583 209 aaKnown RBP23.6■■□□□ 1.37
VPS28-205ENST00000526204 UBE2SQ16763 222 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 CLEC10AQ8IUN9 316 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 LACRTQ9GZZ8 138 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 ABCB6Q9NP58 842 aa23.6■■□□□ 1.37
VPS28-205ENST00000526204 ENC1O14682 589 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 SLC26A4O43511 780 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 MARCH6O60337 910 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 VSNL1P62760 191 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 CCDC96Q2M329 555 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 NOA1Q8NC60 698 aaKnown RBP23.59■■□□□ 1.37
VPS28-205ENST00000526204 HAS1Q92839 578 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 NUDT12Q9BQG2 462 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 EHD4Q9H223 541 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 BMP2KQ9NSY1 1161 aaPredicted RBP23.59■■□□□ 1.37
VPS28-205ENST00000526204 PCDHA12Q9UN75 941 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 KDM3AQ9Y4C1 1321 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 USO1O60763 962 aaKnown RBP23.59■■□□□ 1.37
VPS28-205ENST00000526204 HYIQ5T013 277 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 TTBK2Q6IQ55 1244 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 ARHGAP27Q6ZUM4 889 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 TEKT1Q969V4 418 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 EDEM3Q9BZQ6 932 aa23.59■■□□□ 1.37
VPS28-205ENST00000526204 RCCD1A6NED2 376 aa23.58■■□□□ 1.37
VPS28-205ENST00000526204 CDC42EP5Q6NZY7 148 aa23.58■■□□□ 1.37
VPS28-205ENST00000526204 LRRC55Q6ZSA7 311 aa23.58■■□□□ 1.37
VPS28-205ENST00000526204 MYOCDQ8IZQ8 938 aa23.58■■□□□ 1.37
VPS28-205ENST00000526204 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.58■■□□□ 1.37
VPS28-205ENST00000526204 HDAC6Q9UBN7 1215 aa23.58■■□□□ 1.37
VPS28-205ENST00000526204 MPHOSPH10O00566 681 aaKnown RBP23.57■■□□□ 1.36
VPS28-205ENST00000526204 KCNK18Q7Z418 384 aa23.57■■□□□ 1.36
VPS28-205ENST00000526204 SECISBP2LQ93073 1101 aaKnown RBP23.57■■□□□ 1.36
VPS28-205ENST00000526204 TFR2Q9UP52 801 aa23.57■■□□□ 1.36
VPS28-205ENST00000526204 USP17L10C9JJH3 530 aa23.57■■□□□ 1.36
VPS28-205ENST00000526204 MMRN2Q9H8L6 949 aa23.57■■□□□ 1.36
VPS28-205ENST00000526204 FAM207AQ9NSI2 230 aaPredicted RBP23.57■■□□□ 1.36
VPS28-205ENST00000526204 ATF5Q9Y2D1 282 aaPredicted RBP23.57■■□□□ 1.36
VPS28-205ENST00000526204 QSER1Q2KHR3 1735 aa23.57■■□□□ 1.36
VPS28-205ENST00000526204 NKRFO15226 690 aaKnown RBP eCLIP23.56■■□□□ 1.36
VPS28-205ENST00000526204 USP14P54578 494 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 C2CD5Q86YS7 1000 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 TRIM58Q8NG06 486 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 DNAJC19Q96DA6 116 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 ZCCHC17Q9NP64 241 aaKnown RBP23.56■■□□□ 1.36
VPS28-205ENST00000526204 LCA5LO95447 670 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 SLC16A2P36021 539 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 FKBP3Q00688 224 aaKnown RBP23.56■■□□□ 1.36
VPS28-205ENST00000526204 ATP2B2Q01814 1243 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 CYP27A1Q02318 531 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 COASYQ13057 564 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 IQCEQ6IPM2 695 aa23.56■■□□□ 1.36
VPS28-205ENST00000526204 APOBEC3HQ6NTF7 200 aaKnown RBP23.56■■□□□ 1.36
VPS28-205ENST00000526204 IFIH1Q9BYX4 1025 aaKnown RBP23.56■■□□□ 1.36
VPS28-205ENST00000526204 TARSL2A2RTX5 802 aaKnown RBP23.55■■□□□ 1.36
VPS28-205ENST00000526204 NPR1P16066 1061 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 SCNN1DP51172 638 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 USP11P51784 963 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 KCTD1Q719H9 257 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 MMS19Q96T76 1030 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 DEF6Q9H4E7 631 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 PANK4Q9NVE7 773 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 ARHGAP20Q9P2F6 1191 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 TRPC5Q9UL62 973 aaPredicted RBP23.55■■□□□ 1.36
VPS28-205ENST00000526204 JRKLQ9Y4A0 524 aa23.55■■□□□ 1.36
VPS28-205ENST00000526204 G3V3G9 751 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 ECM1Q16610 540 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 DCAF8Q5TAQ9 597 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 TXLNBQ8N3L3 684 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 TMX4Q9H1E5 349 aaPredicted RBP23.54■■□□□ 1.36
VPS28-205ENST00000526204 ACBD3Q9H3P7 528 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 PCDHA13Q9Y5I0 950 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 ZNF263O14978 683 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 TACC1O75410 805 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 ALDH1B1P30837 517 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 KIF11P52732 1056 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 MAP9Q49MG5 647 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 ZCWPW2Q504Y3 356 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 FAM26FQ5R3K3 315 aa23.54■■□□□ 1.36
VPS28-205ENST00000526204 CCDC65Q8IXS2 484 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms