RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 NR4A1P22736 598 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 PTGER1P34995 402 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 MSX2P35548 267 aaPredicted RBP0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 NHLH1Q02575 133 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 TRIM26Q12899 539 aaPredicted RBP0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 CRHR2Q13324 411 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 SLC9A5Q14940 896 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 PTPAQ15257 358 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 OCLNQ16625 522 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 WIPI1Q5MNZ9 446 aaPredicted RBP0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 AWAT2Q6E213 333 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 ETV3LQ6ZN32 361 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 SIMC1Q8NDZ2 872 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 NUDT10Q8NFP7 164 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZNF384Q8TF68 577 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 NR4A3Q92570 626 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 NUDT11Q96G61 164 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 PLA2G12BQ9BX93 195 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 ASCC2Q9H1I8 757 aaPredicted RBP0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 NPHS2Q9NP85 383 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 AP5S1Q9NUS5 200 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 ERRFI1Q9UJM3 462 aaPredicted RBP0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 OAZ3Q9UMX2 235 aa0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 CCDC9Q9Y3X0 531 aaKnown RBP0.8□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZNF205O95201 554 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 CR2P20023 1033 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 BMP6P22004 513 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 C11orf87Q6NUJ2 197 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 BMP8AQ7Z5Y6 402 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 JAMLQ86YT9 394 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 DNAJC5GQ8N7S2 189 aa0.79□□□□□ -2.28
RNU6-539P-201ENST00000516665 CDC14BO60729 498 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 FAM20BO75063 409 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 IGLV2-14P01704 120 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 MAPK8P45983 427 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 RAC3P60763 192 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 SLC6A19Q695T7 634 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 LLGL2Q6P1M3 1020 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 Q6YL49 198 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 SGMS1Q86VZ5 419 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 IFNL2Q8IZJ0 200 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZNF276Q8N554 614 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 FRS2Q8WU20 508 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 CYB5D2Q8WUJ1 264 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 FUBP1Q96AE4 644 aaKnown RBP0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 LENG9Q96B70 501 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 PEX11GQ96HA9 241 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 CROTQ9UKG9 612 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 PTPN22Q9Y2R2 807 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 SIT1Q9Y3P8 196 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 ZNF521Q96K83 1311 aa0.78□□□□□ -2.28
RNU6-539P-201ENST00000516665 FAM196BA6NMK8 535 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 CAPN14A8MX76 684 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 PAGE1O75459 146 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 ABHD16AO95870 558 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 KRTAP12-2P59991 146 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 SNW1Q13573 536 aaKnown RBP0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 TOB2Q14106 344 aaPredicted RBP0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 LY6G5CQ5SRR4 150 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 GFI1BQ5VTD9 330 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 SPTY2D1Q68D10 685 aaPredicted RBP0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 TRMT10BQ6PF06 316 aaKnown RBP0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 DTHD1Q6ZMT9 781 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 SLC25A43Q8WUT9 341 aaPredicted RBP0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 ASPNQ9BXN1 380 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 CRCT1Q9UGL9 99 aa0.77□□□□□ -2.29
RNU6-539P-201ENST00000516665 PRSS44E7EML9 344 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 PRAMEF1O95521 474 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 PGRP06401 933 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 HOXC13P31276 330 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 CSF2RBP32927 897 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 STAT5AP42229 794 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 MCAMP43121 646 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 POLGP54098 1239 aaPredicted RBP0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 KCNV1Q6PIU1 500 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 THEMISQ8N1K5 641 aaPredicted RBP0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 DTX3Q8N9I9 347 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 NUDT5Q9UKK9 219 aa0.76□□□□□ -2.29
RNU6-539P-201ENST00000516665 KLHL18O94889 574 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 ZBTB7AO95365 584 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 COL6A1P12109 1028 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 PLA2G5P39877 138 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 TAF6P49848 677 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 FCGRTP55899 365 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 OCA2Q04671 838 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 EHHADHQ08426 723 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 RNF151Q2KHN1 245 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 HLA-DQA1Q5Y7H0 255 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 Q6ZUG5 572 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 ZC3H18Q86VM9 953 aaKnown RBP0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 MIB1Q86YT6 1006 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 MCATQ8IVS2 390 aaKnown RBP0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 NAT16Q8N8M0 369 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 DDB2Q92466 427 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 ACSF2Q96CM8 615 aaPredicted RBP0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 CYP4F11Q9HBI6 524 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 KMT5AQ9NQR1 393 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 HS3ST4Q9Y661 456 aa0.75□□□□□ -2.29
RNU6-539P-201ENST00000516665 LRRC3CA6NJW4 275 aa0.74□□□□□ -2.29
RNU6-539P-201ENST00000516665 UPK3BL1B0FP48 263 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms