RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SP7Q8TDD2 431 aaPredicted RBP16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 KAT2BQ92831 832 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 SAMD11Q96NU1 681 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 UIMC1Q96RL1 719 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 FAM50BQ9Y247 325 aa16.79■□□□□ 0.28
PRPF40A-211ENST00000493468 ORC4O43929 436 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 GH1P01241 217 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 HTRA4P83105 476 aaPredicted RBP16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 ARHGAP1Q07960 439 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 PTK7Q13308 1070 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 MKRN4PQ13434 485 aaPredicted RBP16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 PTPROQ16827 1216 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 ZMYM1Q5SVZ6 1142 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 TRAF7Q6Q0C0 670 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 AFG1LQ8WV93 481 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 FBXL18Q96ME1 805 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 CRBNQ96SW2 442 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 SEC62Q99442 399 aaKnown RBP16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 ANAPC4Q9UJX5 808 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 ATG2AQ2TAZ0 1938 aa16.78■□□□□ 0.28
PRPF40A-211ENST00000493468 FOXP2O15409 715 aa16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 FGRP09769 529 aa16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 TOP1P11387 765 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 CASTP20810 708 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 HNRNPUQ00839 825 aaKnown RBP eCLIP16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 ZP2Q05996 745 aa16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 TRIM71Q2Q1W2 868 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 PABPC5Q96DU9 382 aaKnown RBP16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 C17orf80Q9BSJ5 609 aa16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 KATNAL1Q9BW62 490 aa16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 MTMR7Q9Y216 660 aa16.77■□□□□ 0.28
PRPF40A-211ENST00000493468 MYH7BA7E2Y1 1941 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 EMSYQ7Z589 1322 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 C19orf67A6NJJ6 358 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 RANBP6O60518 1105 aaKnown RBP16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 CHMP4BP1P59074 171 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 CTDSPL2Q05D32 466 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 DGKDQ16760 1214 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 TSHZ3Q63HK5 1081 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 EMID1Q96A84 441 aaPredicted RBP16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 SNX27Q96L92 541 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 HDAC6Q9UBN7 1215 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 TRIOO75962 3097 aa16.76■□□□□ 0.27
PRPF40A-211ENST00000493468 FRMPD2Q68DX3 1309 aaPredicted RBP16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 TTC41PQ6P2S7 1318 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 LGR5O75473 907 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 F2P00734 622 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 AMHP03971 560 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 PDHBP11177 359 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 MBTPS1Q14703 1052 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 C7orf31Q8N865 590 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 TMEM47Q9BQJ4 181 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 INCENPQ9NQS7 918 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 TCP11L1Q9NUJ3 509 aa16.75■□□□□ 0.27
PRPF40A-211ENST00000493468 MYH6P13533 1939 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 H3BNC9 293 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 H3BQ06 376 aaPredicted RBP16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 HAS3O00219 553 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 SNHG28P0DPA3 235 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 PSEN2P49810 448 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 ZNF543Q08ER8 600 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 LY6KQ17RY6 165 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 EPC2Q52LR7 807 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 ZNF618Q5T7W0 954 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 FAM117BQ6P1L5 589 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 ADHFE1Q8IWW8 467 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 BANK1Q8NDB2 785 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 UPF3BQ9BZI7 483 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 GPCPD1Q9NPB8 672 aa16.74■□□□□ 0.27
PRPF40A-211ENST00000493468 HOXD8P13378 290 aaPredicted RBP16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 MFSD10Q14728 455 aa16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.73■□□□□ 0.274e-24■■■■■ 39.9
PRPF40A-211ENST00000493468 PPTC7Q8NI37 304 aa16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 NSUN6Q8TEA1 469 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 IWS1Q96ST2 819 aa16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 FSD1Q9BTV5 496 aa16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 NSUN3Q9H649 340 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 DCTPP1Q9H773 170 aa16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 C5orf42Q9H799 3197 aa16.73■□□□□ 0.27
PRPF40A-211ENST00000493468 MYO7AQ13402 2215 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 NCK2O43639 380 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 KIAA0753Q2KHM9 967 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 TCEAL5Q5H9L2 206 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 SEPT14Q6ZU15 432 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 HFE2Q6ZVN8 426 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 MYOCDQ8IZQ8 938 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 PI4K2BQ8TCG2 481 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 WNT8BQ93098 351 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 MFSD14AQ96MC6 490 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 TECTAO75443 2155 aa16.72■□□□□ 0.27
PRPF40A-211ENST00000493468 GPM6BQ13491 265 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 LAMC2Q13753 1193 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 ALX1Q15699 326 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 STXBP2Q15833 593 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 PLEKHG4Q58EX7 1191 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 FBXO11Q86XK2 927 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 DBF4BQ8NFT6 615 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 TTC14Q96N46 770 aa16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 POP1Q99575 1024 aaKnown RBP16.71■□□□□ 0.27
PRPF40A-211ENST00000493468 ALG1Q9BT22 464 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms