RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ALG3Q92685 438 aa5.29□□□□□ -1.56
VPS50-216ENST00000484954 TSPAN17Q96FV3 270 aa5.29□□□□□ -1.56
VPS50-216ENST00000484954 C1orf159Q96HA4 380 aa5.29□□□□□ -1.56
VPS50-216ENST00000484954 LUC7LQ9NQ29 371 aaKnown RBP5.29□□□□□ -1.56
VPS50-216ENST00000484954 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS50-216ENST00000484954 A0A1B0GTL3 188 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 E9PSI1 815 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 FFAR3O14843 346 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 SCG5P05408 212 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 PFKLP17858 780 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 HOXC12P31275 282 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 KCNJ6P48051 423 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 FOXO4P98177 505 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 CABP7Q86V35 215 aa5.28□□□□□ -1.56
VPS50-216ENST00000484954 A0A1W2PQU0 124 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 C22orf46C9J442 243 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 K7ESM1 405 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 SGSM2O43147 1006 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 BCL6P41182 706 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 PPP2R2AP63151 447 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 TARBP2Q15633 366 aaKnown RBP5.27□□□□□ -1.57
VPS50-216ENST00000484954 VWA3BQ502W6 1294 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 SLC35F1Q5T1Q4 408 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 EEPD1Q7L9B9 569 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 PPIL6Q8IXY8 311 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 RCBTB1Q8NDN9 531 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 FNIP1Q8TF40 1166 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 DIO2Q92813 273 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 PEX11GQ96HA9 241 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 NOX5Q96PH1 765 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 PALD1Q9ULE6 856 aa5.27□□□□□ -1.57
VPS50-216ENST00000484954 MEFVO15553 781 aaPredicted RBP5.26□□□□□ -1.57
VPS50-216ENST00000484954 FSHBP01225 129 aa5.26□□□□□ -1.57
VPS50-216ENST00000484954 NCAM1P13591 858 aa5.26□□□□□ -1.57
VPS50-216ENST00000484954 DLX2Q07687 328 aaPredicted RBP5.26□□□□□ -1.57
VPS50-216ENST00000484954 NAALADL2Q58DX5 795 aa5.26□□□□□ -1.57
VPS50-216ENST00000484954 B3GNT8Q7Z7M8 397 aa5.26□□□□□ -1.57
VPS50-216ENST00000484954 LINC01356Q8N9X3 169 aa5.26□□□□□ -1.57
VPS50-216ENST00000484954 ZNF526Q8TF50 670 aaPredicted RBP5.26□□□□□ -1.57
VPS50-216ENST00000484954 RNF38Q9H0F5 515 aa5.26□□□□□ -1.57
VPS50-216ENST00000484954 TIMM13Q9Y5L4 95 aaPredicted RBP5.26□□□□□ -1.57
VPS50-216ENST00000484954 C8BP07358 591 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 TNFRSF1AP19438 455 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 KCNC1P48547 511 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 RPL11P62913 178 aaKnown RBP5.25□□□□□ -1.57
VPS50-216ENST00000484954 HTRA3P83110 453 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 RAB33AQ14088 237 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 TESK1Q15569 626 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 ZNF827Q17R98 1081 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 ACBD5Q5T8D3 534 aaPredicted RBP5.25□□□□□ -1.57
VPS50-216ENST00000484954 E4F1Q66K89 784 aaPredicted RBP5.25□□□□□ -1.57
VPS50-216ENST00000484954 CEP68Q76N32 757 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 Q8N1Y9 231 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 FAM26EQ8N5C1 309 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 SLC16A11Q8NCK7 471 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 SMARCC2Q8TAQ2 1214 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 DDX11Q96FC9 970 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 IER2Q9BTL4 223 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 NUDT5Q9UKK9 219 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 FAN1Q9Y2M0 1017 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 R3HCC1Q9Y3T6 440 aaKnown RBP5.25□□□□□ -1.57
VPS50-216ENST00000484954 PCDHA2Q9Y5H9 948 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 PMF1-BGLAPU3KQ54 211 aa5.25□□□□□ -1.57
VPS50-216ENST00000484954 DLX3O60479 287 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 MSCO60682 206 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 CPP00450 1065 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 LTBRP36941 435 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 ZC3H6P61129 1189 aaKnown RBP5.24□□□□□ -1.57
VPS50-216ENST00000484954 CACNB2Q08289 660 aaPredicted RBP5.24□□□□□ -1.57
VPS50-216ENST00000484954 KCNAB2Q13303 367 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 SLC9A5Q14940 896 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 UBXN11Q5T124 520 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 YOD1Q5VVQ6 348 aaPredicted RBP5.24□□□□□ -1.57
VPS50-216ENST00000484954 FERMT3Q86UX7 667 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 ARHGEF4Q9NR80 690 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 PPARGC1AQ9UBK2 798 aaKnown RBP5.24□□□□□ -1.57
VPS50-216ENST00000484954 SRRDQ9UH36 339 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 X6R8D5 127 aa5.24□□□□□ -1.57
VPS50-216ENST00000484954 ZBTB7AO95365 584 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 IQCEQ6IPM2 695 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 SAPCD2Q86UD0 394 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 DCP2Q8IU60 420 aaKnown RBP5.23□□□□□ -1.57
VPS50-216ENST00000484954 CPA5Q8WXQ8 436 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 TRMT2BQ96GJ1 504 aaKnown RBP5.23□□□□□ -1.57
VPS50-216ENST00000484954 CCDC140Q96MF4 163 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 EPN3Q9H201 632 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 CDIP1Q9H305 208 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 SPATA6Q9NWH7 488 aaPredicted RBP5.23□□□□□ -1.57
VPS50-216ENST00000484954 NPFFR2Q9Y5X5 522 aa5.23□□□□□ -1.57
VPS50-216ENST00000484954 BLACEA4D250 179 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 MATN3O15232 486 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 STAT5AP42229 794 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 SLURP1P55000 103 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 SMAD4Q13485 552 aaKnown RBP5.22□□□□□ -1.57
VPS50-216ENST00000484954 NTRK3Q16288 839 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 LIPIQ6XZB0 460 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 SPATC1Q76KD6 591 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 MILR1Q7Z6M3 343 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 STK32CQ86UX6 486 aa5.22□□□□□ -1.57
VPS50-216ENST00000484954 RIOX2Q8IUF8 465 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms