RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 FXR2P51116 673 aaKnown RBP eCLIP16.18■□□□□ 0.183e-8■■■■■ 30.8
CHD3-211ENST00000481999 CACNB1Q02641 598 aaPredicted RBP16.18■□□□□ 0.18
CHD3-211ENST00000481999 RAD51AP2Q09MP3 1159 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 VCPKMTQ9H867 229 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 PCDHA12Q9UN75 941 aa16.18■□□□□ 0.18
CHD3-211ENST00000481999 MYMKA6NI61 221 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 ERCC3P19447 782 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 PAK1Q13153 545 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 UTP14CQ5TAP6 766 aaKnown RBP16.17■□□□□ 0.18
CHD3-211ENST00000481999 VPS33BQ9H267 617 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.17■□□□□ 0.187e-6■■□□□ 12.1
CHD3-211ENST00000481999 GOLGA6L9A6NEM1 432 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 DMTNQ08495 405 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 PDE4DQ08499 809 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 TNIP1Q15025 636 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 CDKAL1Q5VV42 579 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 BTNL9Q6UXG8 535 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 TMEM139Q8IV31 216 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 CRYGNQ8WXF5 182 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 BAG1Q99933 345 aaPredicted RBP16.17■□□□□ 0.18
CHD3-211ENST00000481999 DEFB129Q9H1M3 183 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 POLD4Q9HCU8 107 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 GOPCQ9HD26 462 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 SLC39A2Q9NP94 309 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 DNAI1Q9UI46 699 aa16.17■□□□□ 0.18
CHD3-211ENST00000481999 POTEB3A0JP26 581 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 POTECB2RU33 542 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 STX10O60499 249 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 TMEM266Q2M3C6 531 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 FKBP1CQ5VVH2 108 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 POTEBQ6S5H4 581 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 REXO1L1PQ8IX06 675 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 TRPM4Q8TD43 1214 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 CPLX3Q8WVH0 158 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 LENG9Q96B70 501 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 CALML4Q96GE6 196 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 AGBL1Q96MI9 1066 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 GTPBP4Q9BZE4 634 aaKnown RBP16.16■□□□□ 0.18
CHD3-211ENST00000481999 VPS16Q9H269 839 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 SPDYE3A6NKU9 549 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 E9PMD0 336 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 ZNF280AP59817 542 aaPredicted RBP16.16■□□□□ 0.18
CHD3-211ENST00000481999 TRIM65Q6PJ69 517 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 KIAA0895Q8NCT3 520 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 LARP4BQ92615 738 aaKnown RBP16.16■□□□□ 0.18
CHD3-211ENST00000481999 ZKSCAN4Q969J2 545 aaPredicted RBP16.16■□□□□ 0.18
CHD3-211ENST00000481999 CDK5RAP3Q96JB5 506 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 PYM1Q9BRP8 204 aaKnown RBP16.16■□□□□ 0.18
CHD3-211ENST00000481999 SRRTQ9BXP5 876 aaKnown RBP16.16■□□□□ 0.18
CHD3-211ENST00000481999 TAB2Q9NYJ8 693 aa16.16■□□□□ 0.18
CHD3-211ENST00000481999 NPHP3-ACAD11A0A0J9YXS1 232 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 TBC1D12O60347 775 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 SSBP05455 408 aaKnown RBP eCLIP16.15■□□□□ 0.18
CHD3-211ENST00000481999 FBXO38Q6PIJ6 1188 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 IRF2BP1Q8IU81 584 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 ADSSL1Q8N142 457 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 PPP2R2CQ9Y2T4 447 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 FZD9O00144 591 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 MEIS1O00470 390 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 RHOBTB3O94955 611 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 ASNSP08243 561 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 IDEP14735 1019 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 PRKG1Q13976 671 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 NR1I3Q14994 352 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 KRT31Q15323 416 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 KIF4BQ2VIQ3 1234 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 CPXCR1Q8N123 301 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 KCNMB3Q9NPA1 279 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 HOMER2Q9NSB8 354 aa16.15■□□□□ 0.18
CHD3-211ENST00000481999 A0A1B0GTH6 734 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 POTEFA5A3E0 1075 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 POTEIP0CG38 1075 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 ANGEL2Q5VTE6 544 aaKnown RBP16.14■□□□□ 0.17
CHD3-211ENST00000481999 KRT79Q5XKE5 535 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 POTEGQ6S5H5 508 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 POTEEQ6S8J3 1075 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 TC2NQ8N9U0 490 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 GIMAP8Q8ND71 665 aaPredicted RBP16.14■□□□□ 0.17
CHD3-211ENST00000481999 FGFBP2Q9BYJ0 223 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 ADD3Q9UEY8 706 aaKnown RBP16.14■□□□□ 0.17
CHD3-211ENST00000481999 RWDD2AQ9UIY3 292 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 KIAA1024Q9UPX6 916 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 ATAD5Q96QE3 1844 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 MED24O75448 989 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 YBX3P16989 372 aaKnown RBP eCLIP16.14■□□□□ 0.17
CHD3-211ENST00000481999 PSMC6P62333 389 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 MTMR2Q13614 643 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 LRRC41Q15345 812 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 ETNPPLQ8TBG4 499 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 WNK4Q96J92 1243 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 BCAS3Q9H6U6 928 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 RMND1Q9NWS8 449 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 TBC1D7Q9P0N9 293 aa16.14■□□□□ 0.17
CHD3-211ENST00000481999 CYP4A11Q02928 519 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 SV2BQ7L1I2 683 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 RAD54LQ92698 747 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 DDX12PQ92771 950 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 EXOC1Q9NV70 894 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 EPS15P42566 896 aa16.13■□□□□ 0.17
CHD3-211ENST00000481999 SPIRE1Q08AE8 756 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms