RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 INF2Q27J81 1249 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 ACCSLQ4AC99 568 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 FAM47AQ5JRC9 791 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 GKAP1Q5VSY0 366 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 PNMA8AQ86V59 439 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 TCP11Q8WWU5 503 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 DCDC2CA8MYV0 355 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 PDE6BP35913 854 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 TNNC1P63316 161 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 FIGNQ5HY92 759 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 MREGQ8N565 214 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 RAPGEF5Q92565 580 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 THOC1Q96FV9 657 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 GOLPH3Q9H4A6 298 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 TAF1DQ9H5J8 278 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 CNOT8Q9UFF9 292 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 SCN11AQ9UI33 1791 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 TMCO5BA8MYB1 307 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 KCNK3O14649 394 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 BUB1BO60566 1050 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 BLIDQ8IZY5 108 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 AKAP11Q9UKA4 1901 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 CLTAP09496 248 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 SLC8A1P32418 973 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 MAGOHP61326 146 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 CRYMQ14894 314 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 ADGRA1Q86SQ6 560 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 MAGOHBQ96A72 148 aaKnown RBP20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 AP1M1Q9BXS5 423 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 KBTBD4Q9NVX7 518 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 TSKSQ9UJT2 592 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 GGA2Q9UJY4 613 aa20.68■□□□□ 0.9
CCDC88B-207ENST00000479965 KLRC1P26715 233 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 MRPL12P52815 198 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 ERVK-9P63128 1117 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 C4orf32Q8N8J7 132 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 MDM1Q8TC05 714 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 TAF4BQ92750 862 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 LRP6O75581 1613 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 ZNF844Q08AG5 666 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 TRIM9Q9C026 710 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 SIK3Q9Y2K2 1263 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 HSPA9P38646 679 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 PPP2R2AP63151 447 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 EVX2Q03828 476 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 MYO1EQ12965 1108 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 KRT71Q3SY84 523 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 FMNL3Q8IVF7 1028 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 ZSCAN29Q8IWY8 852 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 PLA2G12BQ9BX93 195 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 SEMA6BQ9H3T3 888 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 RNF14Q9UBS8 474 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 SLC12A6Q9UHW9 1150 aa20.67■□□□□ 0.9
CCDC88B-207ENST00000479965 PKD1L3Q7Z443 1732 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 HNRNPH3P31942 346 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 EMC10Q5UCC4 262 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 CABP7Q86V35 215 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 RSRC1Q96IZ7 334 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 CARD10Q9BWT7 1032 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 TJP1Q07157 1748 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 PPP1R12AO14974 1030 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 CEP104O60308 925 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 CALM1P0DP23 149 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 CALM2P0DP24 149 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 CALM3P0DP25 149 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 PEX19P40855 299 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 UAP1Q16222 522 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 KIAA0753Q2KHM9 967 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 MTA3Q9BTC8 594 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 PLCB1Q9NQ66 1216 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 TCP11L1Q9NUJ3 509 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 FBXL5Q9UKA1 691 aa20.66■□□□□ 0.9
CCDC88B-207ENST00000479965 DISP2A7MBM2 1401 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 MYH6P13533 1939 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 MAGEB6P1A0A0J9YX57 407 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 RUFY4Q6ZNE9 571 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 DYMQ7RTS9 669 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 CCDC84Q86UT8 332 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 TBC1D5Q92609 795 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 STAMBPL1Q96FJ0 436 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 NOD2Q9HC29 1040 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 CDC25CP30307 473 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 FLT3P36888 993 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 DYNLL1P63167 89 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 IFFO1Q0D2I5 559 aa20.65■□□□□ 0.9
CCDC88B-207ENST00000479965 SLC9C1Q4G0N8 1177 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 CHADLQ6NUI6 762 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 NLRP10Q86W26 655 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 RNF10Q8N5U6 811 aaKnown RBP20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 LRRC45Q96CN5 670 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 PACSIN1Q9BY11 444 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 TRIM31Q9BZY9 425 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 PNPLA7Q6ZV29 1317 aa20.64■□□□□ 0.9
CCDC88B-207ENST00000479965 RGPD5Q99666 1765 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 TXNRD1Q16881 649 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 DNAAF5Q86Y56 855 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 USP38Q8NB14 1042 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 KIAA0895Q8NCT3 520 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 DDX47Q9H0S4 455 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 KANSL2Q9H9L4 492 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms