RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 ARSHQ5FYA8 562 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 POTEEQ6S8J3 1075 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 LRRC47Q8N1G4 583 aaKnown RBP3.86□□□□□ -1.79
UBR3-208ENST00000474426 RNF10Q8N5U6 811 aaKnown RBP3.86□□□□□ -1.79
UBR3-208ENST00000474426 EPS8L1Q8TE68 723 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 KCTD13Q8WZ19 329 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 HERVK_113Q902F9 699 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 SHC3Q92529 594 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 ALKBH8Q96BT7 664 aaKnown RBP3.86□□□□□ -1.79
UBR3-208ENST00000474426 CNDP2Q96KP4 475 aaKnown RBP3.86□□□□□ -1.79
UBR3-208ENST00000474426 FAM167AQ96KS9 214 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 SPATA17Q96L03 361 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 CMTM3Q96MX0 182 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 FERD3LQ96RJ6 166 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 WDR24Q96S15 920 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 TRPV4Q9HBA0 871 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 KIAA1586Q9HCI6 787 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 PCDH18Q9HCL0 1135 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 ABCB6Q9NP58 842 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 ABCF3Q9NUQ8 709 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 NOVA2Q9UNW9 492 aaKnown RBP3.86□□□□□ -1.79
UBR3-208ENST00000474426 GPR52Q9Y2T5 361 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 ZNF711Q9Y462 761 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 DAGLAQ9Y4D2 1042 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 NCOA3Q9Y6Q9 1424 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 ZNF804BA4D1E1 1349 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 ATAD2Q6PL18 1390 aa3.86□□□□□ -1.79
UBR3-208ENST00000474426 P4HA1P13674 534 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 LRRFIP1Q32MZ4 808 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 MTERF2Q49AM1 385 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 KRBOX4Q5JUW0 171 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 MCTP1Q6DN14 999 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 NUP54Q7Z3B4 507 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 FCHSD1Q86WN1 690 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 THNSL2Q86YJ6 484 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 CCDC83Q8IWF9 413 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 ZBTB8BQ8NAP8 495 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 BBOF1Q8ND07 529 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 UTP15Q8TED0 518 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 EMID1Q96A84 441 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 HIC2Q96JB3 615 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 SNX27Q96L92 541 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 SETDB2Q96T68 719 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 TBCBQ99426 244 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 MXD3Q9BW11 206 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 MFRPQ9BY79 579 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 EFR3BQ9Y2G0 817 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 ATP11BQ9Y2G3 1177 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 LEMD3Q9Y2U8 911 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 TRIM75PA6NK02 468 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 CCDC85CA6NKD9 419 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 MASP2O00187 686 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 EVI5O60447 810 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 CAPNS1P04632 268 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PNMA6AP0CW24 399 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 GNL1P36915 607 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 CHMP4BP1P59074 171 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PURAQ00577 322 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 PIN1Q13526 163 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 C15orf59Q2T9L4 293 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 FAM26DQ5JW98 314 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 CCDC183Q5T5S1 534 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 FAM102BQ5T8I3 360 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 TOGARAM2Q6ZUX3 1019 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PPP1R42Q7Z4L9 355 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 TBATAQ96M53 351 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PHOX2BQ99453 314 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 TRPV6Q9H1D0 765 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 XAB2Q9HCS7 855 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 SRA1Q9HD15 236 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 ATP13A1Q9HD20 1204 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 WDR6Q9NNW5 1121 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 LUC7LQ9NQ29 371 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 MCM9Q9NXL9 1143 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 OBP2AQ9NY56 170 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 STK32BQ9NY57 414 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 BICRAQ9NZM4 1560 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 SYNJ2BP-COX16A0A087WUM0 186 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 LOC105371267A0A1B0GV96 52 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 A0A1B0GVC2 190 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 RNF8O76064 485 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 C6orf222P0C671 652 aaPredicted RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 IDO1P14902 403 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 ADH7P40394 386 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PHKA1P46020 1223 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 EPHX4Q8IUS5 362 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 MFN1Q8IWA4 741 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 IQUBQ8NA54 791 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 OR8K1Q8NGG5 319 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 SMARCC2Q8TAQ2 1214 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 TRPC4APQ8TEL6 797 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 CDKL2Q92772 493 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 DEPDC7Q96QD5 511 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PI4K2AQ9BTU6 479 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 EDEM3Q9BZQ6 932 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 CCDC113Q9H0I3 377 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 VPS37BQ9H9H4 285 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 LIN28AQ9H9Z2 209 aaKnown RBP3.85□□□□□ -1.79
UBR3-208ENST00000474426 TMEM260Q9NX78 707 aa3.85□□□□□ -1.79
UBR3-208ENST00000474426 PPP1R14DQ9NXH3 145 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms