RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 KSR1Q8IVT5 923 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 FAM169BQ8N8A8 192 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 LINC00116Q8NCU8 138 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 SHDQ96IW2 340 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 MAP6Q96JE9 813 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 GMLQ99445 158 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 PLCD4Q9BRC7 762 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 TANGO6Q9C0B7 1094 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 BTG4Q9NY30 223 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 USP35Q9P2H5 1018 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 ZNF451Q9Y4E5 1061 aa6.05□□□□□ -1.44
VPS13A-210ENST00000471439 PLEKHH2Q8IVE3 1493 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 CBFA2T2O43439 604 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 SDHBP21912 280 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 POLD1P28340 1107 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 GIPRP48546 466 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 ZNF445P59923 1031 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 DUSP4Q13115 394 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 FZD5Q13467 585 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 NR0B2Q15466 257 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 CEP128Q6ZU80 1094 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 OXR1Q8N573 874 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 ANKS4BQ8N8V4 417 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 SMC1BQ8NDV3 1235 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 DHX38Q92620 1227 aaKnown RBP6.04□□□□□ -1.44
VPS13A-210ENST00000471439 CDADC1Q9BWV3 514 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 AP5S1Q9NUS5 200 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 ERVK13-1Q9NX77 482 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 GPR55Q9Y2T6 319 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-210ENST00000471439 TOPAZ1Q8N9V7 1692 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 ADAMTS7Q9UKP4 1686 aa6.04□□□□□ -1.44
VPS13A-210ENST00000471439 FYCO1Q9BQS8 1478 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 SSU72P8A0A1W2PR75 194 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 ZNF205O95201 554 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 EIF6P56537 245 aaKnown RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 RTP2Q5QGT7 225 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 SYDE1Q6ZW31 735 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 PTF1AQ7RTS3 328 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 CILP2Q8IUL8 1156 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 SYTL4Q96C24 671 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 FAM84AQ96KN4 292 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 DHRS1Q96LJ7 313 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 DSCC1Q9BVC3 393 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 SRRTQ9BXP5 876 aaKnown RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 EPB41L4BQ9H329 900 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 GP6Q9HCN6 339 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 DCP1AQ9NPI6 582 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 FAM53CQ9NYF3 392 aa6.03□□□□□ -1.44
VPS13A-210ENST00000471439 ZNF214Q9UL59 606 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 VIRMAQ69YN4 1812 aaKnown RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 CICQ96RK0 1608 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-210ENST00000471439 ARHGAP31Q2M1Z3 1444 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 RIMS2Q9UQ26 1411 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 A0A1W2PQH9 124 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 VAV1P15498 845 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 BMP8BP34820 402 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 NLRX1Q86UT6 975 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 LILRA2Q8N149 483 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 FIBCD1Q8N539 461 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 ADCY4Q8NFM4 1077 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 PMFBP1Q8TBY8 1022 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 KLHL6Q8WZ60 621 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 INTS4Q96HW7 963 aaKnown RBP6.02□□□□□ -1.45
VPS13A-210ENST00000471439 SEC16BQ96JE7 1060 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 FCRL2Q96LA5 508 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-210ENST00000471439 NOL6Q9H6R4 1146 aaKnown RBP6.02□□□□□ -1.45
VPS13A-210ENST00000471439 YBX2Q9Y2T7 364 aaKnown RBP6.02□□□□□ -1.45
VPS13A-210ENST00000471439 MRVI1Q9Y6F6 885 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 MTUS2Q5JR59 1369 aa6.02□□□□□ -1.45
VPS13A-210ENST00000471439 SPATA31A3Q5VYP0 1347 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 MEGF6O75095 1541 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 MYOCOSA0A1B0GUC4 107 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 FADS2P1A8MWK0 482 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 C1QTNF9P0C862 333 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 CD247P20963 164 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 SOX10P56693 466 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 CHRNEQ04844 493 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 COL9A2Q14055 689 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-210ENST00000471439 TXNRD1Q16881 649 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 ZNF605Q86T29 641 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 FBXO15Q8NCQ5 510 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-210ENST00000471439 TMEM52Q8NDY8 209 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 SNX27Q96L92 541 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 DRC1Q96MC2 740 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 ZDHHC15Q96MV8 337 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 CRBNQ96SW2 442 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 SLC38A3Q99624 504 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 HAUS7Q99871 368 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 SLC12A9Q9BXP2 914 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 MCOLN1Q9GZU1 580 aa6.01□□□□□ -1.45
VPS13A-210ENST00000471439 LMTK2Q8IWU2 1503 aa6□□□□□ -1.45
VPS13A-210ENST00000471439 NRDCO43847 1150 aa6□□□□□ -1.45
VPS13A-210ENST00000471439 GSTM1P09488 218 aa6□□□□□ -1.45
VPS13A-210ENST00000471439 IFNGR1P15260 489 aa6□□□□□ -1.45
VPS13A-210ENST00000471439 GTF2F1P35269 517 aaKnown RBP eCLIP6□□□□□ -1.45
VPS13A-210ENST00000471439 PDE6BP35913 854 aa6□□□□□ -1.45
VPS13A-210ENST00000471439 PPP2R5DQ14738 602 aa6□□□□□ -1.45
VPS13A-210ENST00000471439 SF3A1Q15459 793 aaKnown RBP6□□□□□ -1.45
VPS13A-210ENST00000471439 PKN1Q16512 942 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms