RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 PLEKHA8P1O95397 391 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 CFBP00751 764 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 RXRAP19793 462 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 CYP2C18P33260 490 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 TMEM63BQ5T3F8 832 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 TMTC3Q6ZXV5 915 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 ZNF365Q70YC5 407 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 TCEANC2Q96MN5 208 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 JAKMIP1Q96N16 626 aaKnown RBP21.4■■□□□ 1.02
HOXD3-204ENST00000459979 RMDN3Q96TC7 470 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 ZNF576Q9H609 170 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 BRPF3Q9ULD4 1205 aa21.4■■□□□ 1.02
HOXD3-204ENST00000459979 PSMA5P28066 241 aa21.39■■□□□ 1.01
HOXD3-204ENST00000459979 BLOC1S2Q6QNY1 142 aa21.39■■□□□ 1.01
HOXD3-204ENST00000459979 TMEM199Q8N511 208 aa21.39■■□□□ 1.01
HOXD3-204ENST00000459979 AGXT2Q9BYV1 514 aa21.39■■□□□ 1.01
HOXD3-204ENST00000459979 WDR11Q9BZH6 1224 aa21.39■■□□□ 1.01
HOXD3-204ENST00000459979 RBM28Q9NW13 759 aaKnown RBP21.39■■□□□ 1.01
HOXD3-204ENST00000459979 UMODL1Q5DID0 1318 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 KIAA1217Q5T5P2 1943 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 DYNC1LI2O43237 492 aaPredicted RBP21.38■■□□□ 1.01
HOXD3-204ENST00000459979 ZBTB43O43298 467 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 CD4P01730 458 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 PPP2R5BQ15173 497 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 MICU3Q86XE3 530 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 SCFD2Q8WU76 684 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 PBX4Q9BYU1 374 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 AP5M1Q9H0R1 490 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 PXMP2Q9NR77 195 aa21.38■■□□□ 1.01
HOXD3-204ENST00000459979 SEC63Q9UGP8 760 aaKnown RBP21.38■■□□□ 1.01
HOXD3-204ENST00000459979 GRIN2DO15399 1336 aa21.37■■□□□ 1.01
HOXD3-204ENST00000459979 GCOM1H8Y6P7 765 aaPredicted RBP21.37■■□□□ 1.01
HOXD3-204ENST00000459979 NKRFO15226 690 aaKnown RBP eCLIP21.37■■□□□ 1.01
HOXD3-204ENST00000459979 POLR2MP0CAP2 368 aa21.37■■□□□ 1.01
HOXD3-204ENST00000459979 RPS6KB1P23443 525 aa21.37■■□□□ 1.01
HOXD3-204ENST00000459979 STXBP2Q15833 593 aa21.37■■□□□ 1.01
HOXD3-204ENST00000459979 FSCN1Q16658 493 aaKnown RBP21.37■■□□□ 1.01
HOXD3-204ENST00000459979 RASIP1Q5U651 963 aa21.37■■□□□ 1.01
HOXD3-204ENST00000459979 ARHGEF16Q5VV41 709 aa21.37■■□□□ 1.01
HOXD3-204ENST00000459979 VCANP13611 3396 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 EIF3JO75822 258 aaKnown RBP21.36■■□□□ 1.01
HOXD3-204ENST00000459979 CPA1P15085 419 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 PSMC6P62333 389 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 FUT2Q10981 343 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 ITGA7Q13683 1181 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 RAB11FIP4Q86YS3 637 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 CMTR1Q8N1G2 835 aaKnown RBP21.36■■□□□ 1.01
HOXD3-204ENST00000459979 SLC43A3Q8NBI5 491 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 TM6SF1Q9BZW5 370 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 PRDM6Q9NQX0 595 aa21.36■■□□□ 1.01
HOXD3-204ENST00000459979 KLF18A0A0U1RQI7 1052 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 PIK3CDO00329 1044 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 CABYRO75952 493 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 NR3C2P08235 984 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 RTN1Q16799 776 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 CCDC62Q6P9F0 684 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 PSRC1Q6PGN9 363 aaPredicted RBP21.35■■□□□ 1.01
HOXD3-204ENST00000459979 Q6ZUG5 572 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 VSIG10LQ86VR7 867 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 PIBF1Q8WXW3 757 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 PPM1EQ8WY54 764 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 PDCD2LQ9BRP1 358 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 TRPV6Q9H1D0 765 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 HIPK3Q9H422 1215 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 PRDM12Q9H4Q4 367 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 ZSWIM6Q9HCJ5 1215 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 IL23AQ9NPF7 189 aa21.35■■□□□ 1.01
HOXD3-204ENST00000459979 FAM217BQ9NTX9 383 aaPredicted RBP21.35■■□□□ 1.01
HOXD3-204ENST00000459979 CXXC1Q9P0U4 656 aaPredicted RBP21.35■■□□□ 1.01
HOXD3-204ENST00000459979 SCN5AQ14524 2016 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 ZEB2O60315 1214 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 EIF2AK2P19525 551 aaKnown RBP21.34■■□□□ 1.01
HOXD3-204ENST00000459979 HOXA13P31271 388 aaPredicted RBP21.34■■□□□ 1.01
HOXD3-204ENST00000459979 CCL23P55773 120 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 EVCP57679 992 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 FGD1P98174 961 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 TTLL4Q14679 1199 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 NID2Q14112 1375 aa21.34■■□□□ 1.01
HOXD3-204ENST00000459979 FRMPD4Q14CM0 1322 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 CNTNAP5Q8WYK1 1306 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 B4GALT4O60513 344 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 TXNP10599 105 aaKnown RBP21.33■■□□□ 1.01
HOXD3-204ENST00000459979 CASTP20810 708 aaKnown RBP21.33■■□□□ 1.01
HOXD3-204ENST00000459979 RUFY3Q7L099 469 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 TEX2Q8IWB9 1127 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 BRF1Q92994 677 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 SEZ6LQ9BYH1 1024 aa21.33■■□□□ 1.01
HOXD3-204ENST00000459979 CCDC196A0A1B0GTZ2 297 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 GOLGA8AA7E2F4 631 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 GOLGA8BA8MQT2 603 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 MEIS2O14770 477 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 EIF5BO60841 1220 aaKnown RBP21.32■■□□□ 1
HOXD3-204ENST00000459979 ARIH2O95376 493 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 PGM5Q15124 567 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 OTOP2Q7RTS6 562 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 CCDC82Q8N4S0 544 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 HERVK_113Q902F9 699 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 NKX2-4Q9H2Z4 354 aa21.32■■□□□ 1
HOXD3-204ENST00000459979 A6NJR5 290 aa21.31■■□□□ 1
HOXD3-204ENST00000459979 FGBP02675 491 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms