RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 PIK3CDO00329 1044 aa17.06■□□□□ 0.32
HDAC4-204ENST00000446876 EIF3JO75822 258 aaKnown RBP17.06■□□□□ 0.32
HDAC4-204ENST00000446876 CCND2P30279 289 aa17.06■□□□□ 0.32
HDAC4-204ENST00000446876 PFKFB3Q16875 520 aaPredicted RBP17.06■□□□□ 0.32
HDAC4-204ENST00000446876 VSIG10LQ86VR7 867 aa17.06■□□□□ 0.32
HDAC4-204ENST00000446876 IL17RAQ96F46 866 aa17.06■□□□□ 0.32
HDAC4-204ENST00000446876 SLC26A6Q9BXS9 759 aa17.06■□□□□ 0.32
HDAC4-204ENST00000446876 Q9Y3F1 56 aa17.06■□□□□ 0.32
HDAC4-204ENST00000446876 LTBP2Q14767 1821 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 SORBS3O60504 671 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 EIF5BO60841 1220 aaKnown RBP17.05■□□□□ 0.32
HDAC4-204ENST00000446876 DTNBO60941 627 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 SCG2P13521 617 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 AK2P54819 239 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 MRPS9P82933 396 aaKnown RBP17.05■□□□□ 0.32
HDAC4-204ENST00000446876 PKN1Q16512 942 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 VTI1AQ96AJ9 217 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 ZNF274Q96GC6 653 aaPredicted RBP17.05■□□□□ 0.32
HDAC4-204ENST00000446876 PGBD1Q96JS3 809 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 GLT1D1Q96MS3 346 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 BARHL2Q9NY43 387 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 TPCN1Q9ULQ1 816 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 MRVI1Q9Y6F6 885 aa17.05■□□□□ 0.32
HDAC4-204ENST00000446876 ADAMTS3O15072 1205 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 NKRFO15226 690 aaKnown RBP eCLIP17.04■□□□□ 0.328e-6■□□□□ 9.5
HDAC4-204ENST00000446876 PRPF3O43395 683 aaKnown RBP17.04■□□□□ 0.32
HDAC4-204ENST00000446876 PQBP1O60828 265 aaKnown RBP17.04■□□□□ 0.32
HDAC4-204ENST00000446876 MYL3P08590 195 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 IFNAR1P17181 557 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 ADCY7P51828 1080 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 PSMC6P62333 389 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 TLE2Q04725 743 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 ARHGAP1Q07960 439 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 PPP1R18Q6NYC8 613 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 CHRDL2Q6WN34 429 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 RIC8AQ9NPQ8 531 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 TMEM260Q9NX78 707 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 RTEL1Q9NZ71 1219 aa17.04■□□□□ 0.32
HDAC4-204ENST00000446876 DDX41Q9UJV9 622 aaKnown RBP17.04■□□□□ 0.32
HDAC4-204ENST00000446876 SMCO2A6NFE2 343 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 hCG_1984214I3L0E3 225 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 AKAP17AQ02040 695 aaKnown RBP17.03■□□□□ 0.32
HDAC4-204ENST00000446876 SCRN1Q12765 414 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 C1orf53Q5VUE5 145 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 ZNF713Q8N859 430 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-204ENST00000446876 PPP1R13LQ8WUF5 828 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 AFG1LQ8WV93 481 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 RNF26Q9BY78 433 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-204ENST00000446876 PRDM5Q9NQX1 630 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-204ENST00000446876 PCDHA6Q9UN73 950 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 COLQQ9Y215 455 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-204ENST00000446876 PCDHA8Q9Y5H6 950 aa17.03■□□□□ 0.32
HDAC4-204ENST00000446876 ELP1O95163 1332 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 A0A0U1RQG5 324 aaPredicted RBP17.02■□□□□ 0.32
HDAC4-204ENST00000446876 SPDYE3A6NKU9 549 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 ZEB2O60315 1214 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 LARGE1O95461 756 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 GH1P01241 217 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 CPT1AP50416 773 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 NEK4P51957 841 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 SP2Q02086 613 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 SEMA3FQ13275 785 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 PCNX4Q63HM2 1172 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 SH3RF1Q7Z6J0 888 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 ALDH8A1Q9H2A2 487 aaPredicted RBP17.02■□□□□ 0.32
HDAC4-204ENST00000446876 PDLIM7Q9NR12 457 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 VPS54Q9P1Q0 977 aa17.02■□□□□ 0.32
HDAC4-204ENST00000446876 SCN10AQ9Y5Y9 1956 aa17.02■□□□□ 0.31
HDAC4-204ENST00000446876 GRIN2DO15399 1336 aa17.01■□□□□ 0.31
HDAC4-204ENST00000446876 CPLX1O14810 134 aa17.01■□□□□ 0.31
HDAC4-204ENST00000446876 MMP3P08254 477 aa17.01■□□□□ 0.31
HDAC4-204ENST00000446876 UBA1P22314 1058 aaKnown RBP17.01■□□□□ 0.31
HDAC4-204ENST00000446876 MAGEA10P43363 369 aaPredicted RBP17.01■□□□□ 0.31
HDAC4-204ENST00000446876 PURAQ00577 322 aaKnown RBP17.01■□□□□ 0.31
HDAC4-204ENST00000446876 INPP4AQ96PE3 977 aaPredicted RBP17.01■□□□□ 0.31
HDAC4-204ENST00000446876 SLKQ9H2G2 1235 aaPredicted RBP17.01■□□□□ 0.31
HDAC4-204ENST00000446876 BCAS3Q9H6U6 928 aa17.01■□□□□ 0.31
HDAC4-204ENST00000446876 RBM27Q9P2N5 1060 aaKnown RBP17.01■□□□□ 0.31
HDAC4-204ENST00000446876 GTF3C3Q9Y5Q9 886 aa17.01■□□□□ 0.31
HDAC4-204ENST00000446876 TRIM43BA6NCK2 446 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 A6NJR5 290 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 ARVCFO00192 962 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 PFKFB2O60825 505 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 GGPS1O95749 300 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 CDK7P50613 346 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 MDM2Q00987 491 aaPredicted RBP17■□□□□ 0.31
HDAC4-204ENST00000446876 SSRP1Q08945 709 aaKnown RBP17■□□□□ 0.31
HDAC4-204ENST00000446876 ITGA7Q13683 1181 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 JAKMIP3Q5VZ66 844 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 NECAB1Q8N987 351 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 TRIM43Q96BQ3 446 aaPredicted RBP17■□□□□ 0.31
HDAC4-204ENST00000446876 AIFM3Q96NN9 605 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 ANO3Q9BYT9 981 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 POLR3EQ9NVU0 708 aa17■□□□□ 0.31
HDAC4-204ENST00000446876 CABYRO75952 493 aa16.99■□□□□ 0.31
HDAC4-204ENST00000446876 CLTBP09497 229 aa16.99■□□□□ 0.31
HDAC4-204ENST00000446876 CLK2P49760 499 aaKnown RBP16.99■□□□□ 0.31
HDAC4-204ENST00000446876 FAAP100Q0VG06 881 aa16.99■□□□□ 0.31
HDAC4-204ENST00000446876 ANKRD1Q15327 319 aa16.99■□□□□ 0.31
HDAC4-204ENST00000446876 ME3Q16798 604 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms