RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 YEATS4O95619 227 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 GNA11P29992 359 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 TBC1D10CQ8IV04 446 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 ELOA2Q8IYF1 753 aaPredicted RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 U2AF1L4Q8WU68 220 aaKnown RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 MED15Q96RN5 788 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 XPNPEP3Q9NQH7 507 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 GJB4Q9NTQ9 266 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 INTS13Q9NVM9 706 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 PDE4DIPQ5VU43 2346 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 COL24A1Q17RW2 1714 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 VWA5AO00534 786 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 SF3A1Q15459 793 aaKnown RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 DPCR1Q3MIW9 517 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 PRAMEF19Q5SWL8 479 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 NSUN6Q8TEA1 469 aaKnown RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 PSTPIP2Q9H939 334 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 SENP2Q9HC62 589 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 STARD7Q9NQZ5 370 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 ZNF446Q9NWS9 450 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 KIAA1468Q9P260 1216 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 GABRQQ9UN88 632 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 MORC2Q9Y6X9 1032 aaPredicted RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 DUOX1Q9NRD9 1551 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 MAST2Q6P0Q8 1798 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 U2AF2P26368 475 aaKnown RBP eCLIP8.33□□□□□ -1.084e-6■■■□□ 16.3
CDC42BPA-208ENST00000442054 TTLL4Q14679 1199 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 STXBP2Q15833 593 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 TKFCQ3LXA3 575 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 CYB5R4Q7L1T6 521 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 CCAR2Q8N163 923 aaKnown RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 IGDCC4Q8TDY8 1250 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 PIGSQ96S52 555 aa8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 ZMYND8Q9ULU4 1186 aaPredicted RBP8.33□□□□□ -1.08
CDC42BPA-208ENST00000442054 QSER1Q2KHR3 1735 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 PQBP1O60828 265 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 PTPREP23469 700 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 HOXA7P31268 230 aaPredicted RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 HOXA13P31271 388 aaPredicted RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 CA8P35219 290 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 NT5C2P49902 561 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 MTFR1Q15390 333 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 JAKMIP3Q5VZ66 844 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 C17orf99Q6UX52 265 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 ALG1Q9BT22 464 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 ZBED2Q9BTP6 218 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 UNC93B1Q9H1C4 597 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 DDX41Q9UJV9 622 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 CDK5RAP2Q96SN8 1893 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 DDX60LQ5H9U9 1706 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 RPTORQ8N122 1335 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 SMIM22K7EJ46 135 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 DDX39AO00148 427 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 TXNP10599 105 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 AKR1A1P14550 325 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 TNFAIP2Q03169 654 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 NT5DC1Q5TFE4 455 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 MYSM1Q5VVJ2 828 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 TRIM65Q6PJ69 517 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 C7orf61Q8IZ16 206 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 PAWRQ96IZ0 340 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 ZFP91Q96JP5 570 aaPredicted RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 DNAJC18Q9H819 358 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 SLC45A1Q9Y2W3 748 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 ATRNL1Q5VV63 1379 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 COL11A2P13942 1736 aaPredicted RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 CCDC88AQ3V6T2 1871 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 MYO9BQ13459 2157 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 EVX2Q03828 476 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 TBX2Q13207 712 aaPredicted RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 GLIPR1L2Q4G1C9 344 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 WWC2Q6AWC2 1192 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 SHC4Q6S5L8 630 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 LRRN4CLQ8ND94 238 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 OR6J1Q8NGC5 347 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 BICD2Q8TD16 824 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 ERCC4Q92889 916 aaPredicted RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 TIGD1Q96MW7 591 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 UIMC1Q96RL1 719 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 RBPJLQ9UBG7 517 aa8.32□□□□□ -1.08
CDC42BPA-208ENST00000442054 IRS2Q9Y4H2 1338 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 SPDYE4A6NLX3 237 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 SH2B2O14492 632 aaPredicted RBP8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 CDC27P30260 824 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 QRICH1Q2TAL8 776 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 PCSK9Q8NBP7 692 aaKnown RBP8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 SPATA20Q8TB22 786 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 UBXN6Q9BZV1 441 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 GLT8D2Q9H1C3 349 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 IMPACTQ9P2X3 320 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 ORC3Q9UBD5 711 aaPredicted RBP8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 PAXBP1Q9Y5B6 917 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 PFASO15067 1338 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 GOLGA6L4A6NEF3 574 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 M0QZ92 97 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 NEMFO60524 1076 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 CMA1P23946 247 aa8.31□□□□□ -1.08
CDC42BPA-208ENST00000442054 ZNF543Q08ER8 600 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms