RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SPTLC3Q9NUV7 552 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 GGA3Q9NZ52 723 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 CCPG1Q9ULG6 757 aa21.25■□□□□ 0.99
USP39-202ENST00000409025 FAM86B1E9PN63 330 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 FAM86B2P0C5J1 330 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 MTMR2Q13614 643 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 LENG9Q96B70 501 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 UIMC1Q96RL1 719 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 TANGO6Q9C0B7 1094 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 PICK1Q9NRD5 415 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 MAPK8IP1Q9UQF2 711 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 SBF1O95248 1867 aa21.24■□□□□ 0.99
USP39-202ENST00000409025 EPS15P42566 896 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 CTAGE1Q96RT6 745 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 WRNIP1Q96S55 665 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 WDR18Q9BV38 432 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 INTS13Q9NVM9 706 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 STK24Q9Y6E0 443 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 PSMA7O14818 248 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 PPP1R2P41236 205 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 PRAMEF18Q5VWM3 479 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 CNNM4Q6P4Q7 775 aa21.23■□□□□ 0.99
USP39-202ENST00000409025 PVALEFA0A1B0GWK0 134 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 MYMKA6NI61 221 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 SKILP12757 684 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 VCAM1P19320 739 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 SFPQP23246 707 aaKnown RBP eCLIP21.22■□□□□ 0.99
USP39-202ENST00000409025 SPP2Q13103 211 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 ECM1Q16610 540 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 HAUS3Q68CZ6 603 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 ERMNQ8TAM6 284 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 AGBL1Q96MI9 1066 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 EMILIN3Q9NT22 766 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 ZNF536O15090 1300 aa21.22■□□□□ 0.99
USP39-202ENST00000409025 A0A1B0GTH6 734 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 MSH4O15457 936 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 COBLO75128 1261 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 FLOT1O75955 427 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 HIRAP54198 1017 aaPredicted RBP21.21■□□□□ 0.99
USP39-202ENST00000409025 SPAG1Q07617 926 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 NR1I3Q14994 352 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 UNC13DQ70J99 1090 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 KCNK18Q7Z418 384 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 ZKSCAN4Q969J2 545 aaPredicted RBP21.21■□□□□ 0.99
USP39-202ENST00000409025 DHTKD1Q96HY7 919 aaPredicted RBP21.21■□□□□ 0.99
USP39-202ENST00000409025 PTPRAP18433 802 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 STAT3P40763 770 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 BACE1P56817 501 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 CCZ1BP86790 482 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 CCZ1P86791 482 aaPredicted RBP21.21■□□□□ 0.99
USP39-202ENST00000409025 DGKZQ13574 1117 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 FILIP1LQ4L180 1135 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 ARMCX5Q6P1M9 558 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 ZNF280CQ8ND82 737 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 ANKRD20A12PQ8NF67 263 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 RPAP3Q9H6T3 665 aaPredicted RBP21.21■□□□□ 0.99
USP39-202ENST00000409025 KIAA1024Q9UPX6 916 aa21.21■□□□□ 0.99
USP39-202ENST00000409025 NRDCO43847 1150 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 SPIRE1Q08AE8 756 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 SUPT20HL1Q3ZLR7 823 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 NCAPH2Q6IBW4 605 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 SLC38A10Q9HBR0 1119 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 PNMA2Q9UL42 364 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 PPP1R9AQ9ULJ8 1098 aa21.2■□□□□ 0.98
USP39-202ENST00000409025 CTDP1Q9Y5B0 961 aaPredicted RBP21.2■□□□□ 0.98
USP39-202ENST00000409025 IGLV3-22A0A075B6J6 115 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 HOXA7P31268 230 aaPredicted RBP21.19■□□□□ 0.98
USP39-202ENST00000409025 COBLL1Q53SF7 1204 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 DYMQ7RTS9 669 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 APTXQ7Z2E3 356 aaKnown RBP21.19■□□□□ 0.98
USP39-202ENST00000409025 MCF2L2Q86YR7 1114 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 CYP2W1Q8TAV3 490 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 FDX1P10109 184 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 HSD17B4P51659 736 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 STK4Q13043 487 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 DNTTIP2Q5QJE6 756 aaKnown RBP21.19■□□□□ 0.98
USP39-202ENST00000409025 SPECC1LQ69YQ0 1117 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 CPXCR1Q8N123 301 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 DDX12PQ92771 950 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 KLRG1Q96E93 195 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 BMP2KQ9NSY1 1161 aaPredicted RBP21.19■□□□□ 0.98
USP39-202ENST00000409025 ADD3Q9UEY8 706 aaKnown RBP21.19■□□□□ 0.98
USP39-202ENST00000409025 LIMA1Q9UHB6 759 aaKnown RBP21.19■□□□□ 0.98
USP39-202ENST00000409025 RABGAP1Q9Y3P9 1069 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 PITPNM2Q9BZ72 1349 aa21.19■□□□□ 0.98
USP39-202ENST00000409025 POTEB3A0JP26 581 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 BICDL2A1A5D9 508 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 POTECB2RU33 542 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 ZBED4O75132 1171 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 DDNO94850 711 aaPredicted RBP21.18■□□□□ 0.98
USP39-202ENST00000409025 FCER1AP12319 257 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 POTEBQ6S5H4 581 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 RAVER2Q9HCJ3 691 aaKnown RBP21.18■□□□□ 0.98
USP39-202ENST00000409025 RNF181Q9P0P0 153 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 ZHX2Q9Y6X8 837 aa21.18■□□□□ 0.98
USP39-202ENST00000409025 TRIM49BA6NDI0 452 aa21.17■□□□□ 0.98
USP39-202ENST00000409025 E9PMD0 336 aa21.17■□□□□ 0.98
USP39-202ENST00000409025 MED24O75448 989 aa21.17■□□□□ 0.98
USP39-202ENST00000409025 ALAS1P13196 640 aa21.17■□□□□ 0.98
USP39-202ENST00000409025 NOC3LQ8WTT2 800 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms