RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 POLR2MP0CAP2 368 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 CYP2C9P11712 490 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 TRAF1Q13077 416 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 PGM5Q15124 567 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 FAM47CQ5HY64 1035 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 ZNF697Q5TEC3 545 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 ZNF365Q70YC5 407 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 FCHSD1Q86WN1 690 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 RAB11FIP4Q86YS3 637 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 ZFP91Q96JP5 570 aaPredicted RBP22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 WNT8AQ9H1J5 351 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 STXBP5LQ9Y2K9 1186 aa22.33■■□□□ 1.17
SMARCB1-204ENST00000407422 CCDC69A6NI79 296 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 PLEKHA8P1O95397 391 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 MMP3P08254 477 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 KIF5BP33176 963 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 VSIG10LQ86VR7 867 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 CMTR1Q8N1G2 835 aaKnown RBP22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 TMTC2Q8N394 836 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 SAMD3Q8N6K7 520 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 SPZ1Q9BXG8 430 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 MRVI1Q9Y6F6 885 aa22.32■■□□□ 1.16
SMARCB1-204ENST00000407422 CHD9Q3L8U1 2897 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 LIFRP42702 1097 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 CHMP4BP1P59074 171 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 SRBD1Q8N5C6 995 aaKnown RBP22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 TTYH1Q9H313 450 aaPredicted RBP22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 IL23AQ9NPF7 189 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 SCN5AQ14524 2016 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 RASIP1Q5U651 963 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 NFRKBQ6P4R8 1299 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 RRP36Q96EU6 259 aaKnown RBP22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 SEMA6BQ9H3T3 888 aa22.31■■□□□ 1.16
SMARCB1-204ENST00000407422 CDC45O75419 566 aa22.3■■□□□ 1.16
SMARCB1-204ENST00000407422 SUPT20HL2P0C7V6 817 aa22.3■■□□□ 1.16
SMARCB1-204ENST00000407422 KAT2BQ92831 832 aa22.3■■□□□ 1.16
SMARCB1-204ENST00000407422 SCLYQ96I15 445 aa22.3■■□□□ 1.16
SMARCB1-204ENST00000407422 CCDC136Q96JN2 1154 aa22.3■■□□□ 1.16
SMARCB1-204ENST00000407422 TRIP12Q14669 1992 aaPredicted RBP22.3■■□□□ 1.16
SMARCB1-204ENST00000407422 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 SORBS3O60504 671 aa22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 SMARCA1P28370 1054 aa22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 RNF20Q5VTR2 975 aa22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 PSRC1Q6PGN9 363 aaPredicted RBP22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 RASEFQ8IZ41 740 aa22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 GPKOWQ92917 476 aaPredicted RBP eCLIP22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 EMID1Q96A84 441 aaPredicted RBP22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 LZTS2Q9BRK4 669 aa22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 SLC12A7Q9Y666 1083 aa22.29■■□□□ 1.16
SMARCB1-204ENST00000407422 GRXCR1A8MXD5 290 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 CCND2P30279 289 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 SP2Q02086 613 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 VWCEQ96DN2 955 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 TCEANC2Q96MN5 208 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 CXXC1Q9P0U4 656 aaPredicted RBP22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 CASTP20810 708 aaKnown RBP22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 GNAQP50148 359 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 LAMC2Q13753 1193 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 DGKDQ16760 1214 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 ADCK5Q3MIX3 580 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 USP17L6PQ6QN14 398 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 DHX37Q8IY37 1157 aaKnown RBP22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 CCDC82Q8N4S0 544 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 NEK1Q96PY6 1258 aa22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 CDX2Q99626 313 aaPredicted RBP22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 SEC63Q9UGP8 760 aaKnown RBP22.28■■□□□ 1.16
SMARCB1-204ENST00000407422 DOCK5Q9H7D0 1870 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 hCG_1642624A0A1W2PR95 340 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 FGBP02675 491 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 CALM1P0DP23 149 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 CALM2P0DP24 149 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 CALM3P0DP25 149 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 MYSM1Q5VVJ2 828 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 OTOP2Q7RTS6 562 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 SGMS1Q86VZ5 419 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 MICU3Q86XE3 530 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 PPTC7Q8NI37 304 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 HERVK_113Q902F9 699 aa22.27■■□□□ 1.16
SMARCB1-204ENST00000407422 MYO9BQ13459 2157 aa22.27■■□□□ 1.15
SMARCB1-204ENST00000407422 CHD7Q9P2D1 2997 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 ZNF286BP0CG31 522 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 DNAJB2P25686 324 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 MRPS9P82933 396 aaKnown RBP22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 PTPN11Q06124 597 aaPredicted RBP22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 CELF3Q5SZQ8 465 aaKnown RBP22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 FANCBQ8NB91 859 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 SLC17A8Q8NDX2 589 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 GBF1Q92538 1859 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 FRMPD4Q14CM0 1322 aa22.26■■□□□ 1.15
SMARCB1-204ENST00000407422 MEIS2O14770 477 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 GGPS1O95749 300 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 UBA1P22314 1058 aaKnown RBP22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 PBX2P40425 430 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 EXOSC10Q01780 885 aaKnown RBP22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 HSDL1Q3SXM5 330 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 KCNV1Q6PIU1 500 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 CTAGE1Q96RT6 745 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 BCAS3Q9H6U6 928 aa22.25■■□□□ 1.15
SMARCB1-204ENST00000407422 PTGISQ16647 500 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms