RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TRIM21P19474 475 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 LIFRP42702 1097 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 PPP1R7Q15435 360 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 MIS18BP1Q6P0N0 1132 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 ARMC9Q7Z3E5 817 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 TRIM22Q8IYM9 498 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 RETREG2Q8NC44 543 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 ZBTB10Q96DT7 871 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 MS4A14Q96JA4 679 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 CCDC42Q96M95 316 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 TLR10Q9BXR5 811 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 GDAQ9Y2T3 454 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 TRIM49BA6NDI0 452 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 GCOM1H8Y6P7 765 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 GTPBP6O43824 516 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 PDE8AO60658 829 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 MYZAPP0CAP1 466 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 IL6STP40189 918 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 GKAP1Q5VSY0 366 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 PDXDC2PQ6P474 469 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 LINC00116Q8NCU8 138 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 IFIH1Q9BYX4 1025 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 PIH1D3Q9NQM4 214 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 CCDC87Q9NVE4 849 aa16.18■□□□□ 0.18
VPS9D1-201ENST00000389386 ENO4A6NNW6 628 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 H0YGN5 161 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 AP1G2O75843 785 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 KLK7P49862 253 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 RBBP5Q15291 538 aaKnown RBP16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 TRADDQ15628 312 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 SPDYE1Q8NFV5 336 aaPredicted RBP16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 NFS1Q9Y697 457 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 B4DLN1 442 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 MPHOSPH10O00566 681 aaKnown RBP16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 PLEKP08567 350 aaPredicted RBP16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 CFAP221Q4G0U5 840 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 ALS2CR12Q96Q35 445 aa16.17■□□□□ 0.18
VPS9D1-201ENST00000389386 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.17■□□□□ 0.187e-8■■■■□ 19.8
VPS9D1-201ENST00000389386 THSD7AQ9UPZ6 1657 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CCT8L1PA6NM43 557 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 ONECUT3O60422 494 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 PDE8BO95263 885 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 DEXIO95424 95 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 PECAM1P16284 738 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 DRD4P21917 467 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 SLMAPQ14BN4 828 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 ZNF34Q8IZ26 560 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 L3MBTL3Q96JM7 780 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 ZNF570Q96NI8 536 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 TAF1DQ9H5J8 278 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CNOT8Q9UFF9 292 aaKnown RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CORO1CQ9ULV4 474 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 L3MBTL1Q9Y468 752 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 PHF20L1A8MW92 1017 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 F8W031 263 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 TRIM37O94972 964 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 RPN1P04843 607 aaKnown RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 PMS1P54277 932 aaKnown RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 ADSSL1Q8N142 457 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CCDC82Q8N4S0 544 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CRACR2BQ8N4Y2 399 aaPredicted RBP16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CCDC155Q8N6L0 562 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 VGLL2Q8N8G2 317 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 CCHCR1Q8TD31 782 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 THAP9Q9H5L6 903 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 INCENPQ9NQS7 918 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 EXOC1Q9NV70 894 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 RMND1Q9NWS8 449 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 RNF14Q9UBS8 474 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 MYH13Q9UKX3 1938 aa16.16■□□□□ 0.18
VPS9D1-201ENST00000389386 WTIPA6NIX2 430 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 BIRC3Q13489 604 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 EARS2Q5JPH6 523 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 CPLX4Q7Z7G2 160 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 NDST4Q9H3R1 872 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 NID2Q14112 1375 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 WNT7AO00755 349 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 IFIT3O14879 490 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 HSD17B3P37058 310 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 PPP2R2AP63151 447 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 NBPF5PQ86XG9 351 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 TCP11Q8WWU5 503 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 SALL4Q9UJQ4 1053 aa16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 NIP7Q9Y221 180 aaKnown RBP eCLIP16.15■□□□□ 0.18
VPS9D1-201ENST00000389386 ERICH2A1L162 156 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 ORC4O43929 436 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 ZNF844Q08AG5 666 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 RTN1Q16799 776 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 BICDL1Q6ZP65 573 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 CMTR1Q8N1G2 835 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 CCDC63Q8NA47 563 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 OR2W6PQ8NHA6 318 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 ITFG2Q969R8 447 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 ZSWIM5Q9P217 1185 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 TTC36A6NLP5 189 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 LCA5LO95447 670 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 CLTAP09496 248 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 TRAF1Q13077 416 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 KLHDC7AQ5VTJ3 777 aa16.14■□□□□ 0.17
VPS9D1-201ENST00000389386 SHISA4Q96DD7 197 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms