RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TRIM29Q14134 588 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 STK38Q15208 465 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 PKN1Q16512 942 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 MFSD14CQ5VZR4 134 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 NSMFQ6X4W1 530 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 LINC00301Q8NCQ3 95 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 MAML3Q96JK9 1138 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 GOLPH3LQ9H4A5 285 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 C6orf50Q9HD87 102 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 RIC8AQ9NPQ8 531 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 GABRQQ9UN88 632 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 CLIC4Q9Y696 253 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 MRVI1Q9Y6F6 885 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 A0A1W2PQ27 194 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 A0A1W2PQ64 194 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 A0A1W2PQD8 194 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 CYP2B6P20813 491 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 CALML3P27482 149 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 NAPAP54920 295 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 UBXN2AP68543 259 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 FAM160A1Q05DH4 1040 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 SNW1Q13573 536 aaKnown RBP11.59□□□□□ -0.55
VPS53-202ENST00000389040 SF3A1Q15459 793 aaKnown RBP11.59□□□□□ -0.55
VPS53-202ENST00000389040 SLC9C1Q4G0N8 1177 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 WWC2Q6AWC2 1192 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 ADALQ6DHV7 355 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 XRRA1Q6P2D8 792 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 FAM200AQ8TCP9 573 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 MORC4Q8TE76 937 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 NSUN6Q8TEA1 469 aaKnown RBP11.59□□□□□ -0.55
VPS53-202ENST00000389040 ARMC5Q96C12 935 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 CCDC39Q9UFE4 941 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 USP25Q9UHP3 1055 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 PCDHA7Q9UN72 937 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 ZNF236Q9UL36 1845 aa11.59□□□□□ -0.55
VPS53-202ENST00000389040 OPLAHO14841 1288 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 CTAGE5O15320 804 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 KINO60870 393 aaKnown RBP11.58□□□□□ -0.55
VPS53-202ENST00000389040 CFBP00751 764 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 ANO1Q5XXA6 986 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 SASS6Q6UVJ0 657 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 FSIP1Q8NA03 581 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 ENGASEQ8NFI3 743 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 SYTL5Q8TDW5 730 aaPredicted RBP11.58□□□□□ -0.55
VPS53-202ENST00000389040 MRPS27Q92552 414 aaKnown RBP11.58□□□□□ -0.55
VPS53-202ENST00000389040 TINF2Q9BSI4 451 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 EHMT1Q9H9B1 1298 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 PTCH2Q9Y6C5 1203 aa11.58□□□□□ -0.55
VPS53-202ENST00000389040 SMCO2A6NFE2 343 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 MEIS2O14770 477 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 SPTLC2O15270 562 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 STAM2O75886 525 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 PGK2P07205 417 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 AP3B2Q13367 1082 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 GNL2Q13823 731 aaKnown RBP11.58□□□□□ -0.56
VPS53-202ENST00000389040 ANO6Q4KMQ2 910 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 PIBF1Q8WXW3 757 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 ABHD16BQ9H3Z7 469 aa11.58□□□□□ -0.56
VPS53-202ENST00000389040 NOL7Q9UMY1 257 aaKnown RBP11.58□□□□□ -0.56
VPS53-202ENST00000389040 ADCY5O95622 1261 aa11.57□□□□□ -0.56
VPS53-202ENST00000389040 EDNRBP24530 442 aa11.57□□□□□ -0.56
VPS53-202ENST00000389040 MSNP26038 577 aaKnown RBP11.57□□□□□ -0.56
VPS53-202ENST00000389040 U2AF2P26368 475 aaKnown RBP eCLIP11.57□□□□□ -0.56
VPS53-202ENST00000389040 ADCY7P51828 1080 aa11.57□□□□□ -0.56
VPS53-202ENST00000389040 MAP3K21Q5TCX8 1036 aa11.57□□□□□ -0.56
VPS53-202ENST00000389040 NPLOC4Q8TAT6 608 aa11.57□□□□□ -0.56
VPS53-202ENST00000389040 MCOLN1Q9GZU1 580 aa11.57□□□□□ -0.56
VPS53-202ENST00000389040 hCG_1642624A0A1W2PR95 340 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 SPDYE3A6NKU9 549 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 MSCO60682 206 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 CAVIN2O95810 425 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 DAGLBQ8NCG7 672 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 GPKOWQ92917 476 aaPredicted RBP eCLIP11.56□□□□□ -0.56
VPS53-202ENST00000389040 RMDN3Q96TC7 470 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 RPTORQ8N122 1335 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 SOWAHBA6NEL2 793 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 PTMAP06454 111 aaKnown RBP11.56□□□□□ -0.56
VPS53-202ENST00000389040 ALDH5A1P51649 535 aaPredicted RBP11.56□□□□□ -0.56
VPS53-202ENST00000389040 NLRP5P59047 1200 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 CNTN2Q02246 1040 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 SLC39A14Q15043 492 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 ARHGEF16Q5VV41 709 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 SLC30A10Q6XR72 485 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 FMR1NBQ8N0W7 255 aaPredicted RBP11.56□□□□□ -0.56
VPS53-202ENST00000389040 TRIB2Q92519 343 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 BRMS1Q9HCU9 246 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 VTA1Q9NP79 307 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 FRMPD4Q14CM0 1322 aa11.56□□□□□ -0.56
VPS53-202ENST00000389040 A0A1B0GVL5 298 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 EIF3JO75822 258 aaKnown RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 MMP1P03956 469 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 CLK2P49760 499 aaKnown RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 SAFBQ15424 915 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS53-202ENST00000389040 STXBP2Q15833 593 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 TYW1BQ6NUM6 668 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 KCNV1Q6PIU1 500 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 REXO1Q8N1G1 1221 aaKnown RBP11.55□□□□□ -0.56
VPS53-202ENST00000389040 TBC1D5Q92609 795 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 ZNF333Q96JL9 665 aa11.55□□□□□ -0.56
VPS53-202ENST00000389040 FGD4Q96M96 766 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms