RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CYTH3O43739 400 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 GLI1P08151 1106 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 CARSP49589 748 aaKnown RBP23.38■■□□□ 1.33
UPF3A-202ENST00000375299 MARCH10Q8NA82 808 aaPredicted RBP23.38■■□□□ 1.33
UPF3A-202ENST00000375299 ANKS1AQ92625 1134 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 NCAPGQ9BPX3 1015 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 NFU1Q9UMS0 254 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 TAF1P21675 1872 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 SPATA31A1Q5TZJ5 1347 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 MAST2Q6P0Q8 1798 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 HEXIM1O94992 359 aaKnown RBP23.38■■□□□ 1.33
UPF3A-202ENST00000375299 FGFR1OPO95684 399 aaKnown RBP23.38■■□□□ 1.33
UPF3A-202ENST00000375299 MREGQ8N565 214 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 RNPC3Q96LT9 517 aaKnown RBP23.38■■□□□ 1.33
UPF3A-202ENST00000375299 ZNF233A6NK53 670 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 CCNT1O60563 726 aaKnown RBP23.37■■□□□ 1.33
UPF3A-202ENST00000375299 KIAA0754O94854 1291 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 SLC1A4P43007 532 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 LETM2Q2VYF4 491 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 CD302Q8IX05 232 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 PRPF38AQ8NAV1 312 aaKnown RBP23.37■■□□□ 1.33
UPF3A-202ENST00000375299 MMTAG2Q9BU76 263 aaKnown RBP23.37■■□□□ 1.33
UPF3A-202ENST00000375299 FAM153BP0C7A2 387 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 FAM153CQ494X1 144 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 EMC10Q5UCC4 262 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 C3orf67Q6ZVT6 689 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 KRT25Q7Z3Z0 450 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 CALML4Q96GE6 196 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 PAGR1Q9BTK6 254 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 EDEM3Q9BZQ6 932 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 EPB41L5Q9HCM4 733 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 FAM153AQ9UHL3 310 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 CAPN7Q9Y6W3 813 aa23.37■■□□□ 1.33
UPF3A-202ENST00000375299 LSP1P33241 339 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 TECP42680 631 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 NAP1L1P55209 391 aaKnown RBP23.36■■□□□ 1.33
UPF3A-202ENST00000375299 CACNA2D4Q7Z3S7 1137 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 MCM9Q9NXL9 1143 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 ZNF652Q9Y2D9 606 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 CCDC88AQ3V6T2 1871 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 RBAK-RBAKDNI3L0D1 243 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 MEFVO15553 781 aaPredicted RBP23.36■■□□□ 1.33
UPF3A-202ENST00000375299 GUCY2DQ02846 1103 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 NONOQ15233 471 aaKnown RBP eCLIP23.36■■□□□ 1.33
UPF3A-202ENST00000375299 SLC4A8Q2Y0W8 1093 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 ERFEQ4G0M1 354 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 HGSNATQ68CP4 663 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 UNC13DQ70J99 1090 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 SV2BQ7L1I2 683 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 OTUD6BQ8N6M0 293 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 EPN3Q9H201 632 aa23.36■■□□□ 1.33
UPF3A-202ENST00000375299 ATP2B2Q01814 1243 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 FBXO33Q7Z6M2 555 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 IFT81Q8WYA0 676 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 PIK3R5Q8WYR1 880 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 MYCBPQ99417 103 aaPredicted RBP23.35■■□□□ 1.33
UPF3A-202ENST00000375299 BSDC1Q9NW68 430 aaPredicted RBP23.35■■□□□ 1.33
UPF3A-202ENST00000375299 THRAP3Q9Y2W1 955 aaKnown RBP23.35■■□□□ 1.33
UPF3A-202ENST00000375299 ESYT3A0FGR9 886 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 ZSCAN5CA6NGD5 496 aaPredicted RBP23.35■■□□□ 1.33
UPF3A-202ENST00000375299 FSBPO95073 299 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 USP17L8P0C7I0 530 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 FNTAP49354 379 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 MNAT1P51948 309 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 TDRD12Q587J7 1177 aaKnown RBP23.35■■□□□ 1.33
UPF3A-202ENST00000375299 MICALCLQ6ZW33 695 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 CCDC91Q7Z6B0 441 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 GUF1Q8N442 669 aaKnown RBP23.35■■□□□ 1.33
UPF3A-202ENST00000375299 ZMYND12Q9H0C1 365 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 MINPP1Q9UNW1 487 aa23.35■■□□□ 1.33
UPF3A-202ENST00000375299 PVALEFA0A1B0GWK0 134 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 GRID2IPA4D2P6 1211 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 NR1D1P20393 614 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 NT5C2P49902 561 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 LRRC63Q05C16 580 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 NAA35Q5VZE5 725 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 ROBO1Q9Y6N7 1651 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 MYMKA6NI61 221 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 GUCY1A3Q02108 690 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 SF3B3Q15393 1217 aaKnown RBP23.34■■□□□ 1.33
UPF3A-202ENST00000375299 LRRC55Q6ZSA7 311 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 TMC4Q7Z404 712 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 NEK8Q86SG6 692 aa23.34■■□□□ 1.33
UPF3A-202ENST00000375299 C1orf131Q8NDD1 294 aaKnown RBP23.34■■□□□ 1.33
UPF3A-202ENST00000375299 NAPAP54920 295 aa23.33■■□□□ 1.33
UPF3A-202ENST00000375299 ARHGAP27Q6ZUM4 889 aa23.33■■□□□ 1.33
UPF3A-202ENST00000375299 WHAMMQ8TF30 809 aa23.33■■□□□ 1.33
UPF3A-202ENST00000375299 CASKIN2Q8WXE0 1202 aa23.33■■□□□ 1.33
UPF3A-202ENST00000375299 BLOC1S4Q9NUP1 217 aa23.33■■□□□ 1.33
UPF3A-202ENST00000375299 PALM3A6NDB9 673 aaPredicted RBP23.33■■□□□ 1.32
UPF3A-202ENST00000375299 PALMO75781 387 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 PPP1R37O75864 691 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 PRDX5P30044 214 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 GUCY2FP51841 1108 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 GRB10Q13322 594 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 PTGISQ16647 500 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 SLC9C1Q4G0N8 1177 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 CLEC4GQ6UXB4 293 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 YTHDF3Q7Z739 585 aaKnown RBP23.33■■□□□ 1.32
UPF3A-202ENST00000375299 ZNF473Q8WTR7 871 aaKnown RBP23.33■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms