RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SNRNP48Q6IEG0 339 aaKnown RBP16.14■□□□□ 0.17
HMGA1-203ENST00000374116 KRT222Q8N1A0 295 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 GPRC5AQ8NFJ5 357 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 ERCC4Q92889 916 aaPredicted RBP16.14■□□□□ 0.17
HMGA1-203ENST00000374116 CALCOCO1Q9P1Z2 691 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 RABGAP1Q9Y3P9 1069 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 A0A0G2JMZ2 1700 aa16.14■□□□□ 0.17
HMGA1-203ENST00000374116 DOCK3Q8IZD9 2030 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 PLA2G6O60733 806 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 ZBED4O75132 1171 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 SP3Q02447 781 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 NR5A1Q13285 461 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 FAM110CQ1W6H9 321 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 QRICH1Q2TAL8 776 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 ELOA2Q8IYF1 753 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-203ENST00000374116 AOPEPQ8N6M6 819 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 CD99L2Q8TCZ2 262 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 OXER1Q8TDS5 423 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 MOV10L1Q9BXT6 1211 aaKnown RBP16.13■□□□□ 0.17
HMGA1-203ENST00000374116 SPATC1LQ9H0A9 340 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 RANBP17Q9H2T7 1088 aaKnown RBP16.13■□□□□ 0.17
HMGA1-203ENST00000374116 CEP131Q9UPN4 1083 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 MYPNQ86TC9 1320 aa16.13■□□□□ 0.17
HMGA1-203ENST00000374116 PPP1R11O60927 126 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-203ENST00000374116 HSPA8P11142 646 aaKnown RBP16.12■□□□□ 0.17
HMGA1-203ENST00000374116 STAT3P40763 770 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 COL13A1Q5TAT6 717 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-203ENST00000374116 NCAPG2Q86XI2 1143 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 TNFRSF25Q93038 417 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 CFHR5Q9BXR6 569 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 RIOX1Q9H6W3 641 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 TUBE1Q9UJT0 475 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 A0A087WWV3 80 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 ALAS1P13196 640 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 ERCC3P19447 782 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 DPCR1Q3MIW9 517 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 ZNF397Q8NF99 534 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-203ENST00000374116 VPS54Q9P1Q0 977 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 MORF4L1Q9UBU8 362 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 NRBP1Q9UHY1 535 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 CCPG1Q9ULG6 757 aa16.12■□□□□ 0.17
HMGA1-203ENST00000374116 NEMFO60524 1076 aa16.11■□□□□ 0.17
HMGA1-203ENST00000374116 TPM4P67936 248 aa16.11■□□□□ 0.17
HMGA1-203ENST00000374116 LACTBP83111 547 aaPredicted RBP16.11■□□□□ 0.17
HMGA1-203ENST00000374116 MB21D1Q8N884 522 aa16.11■□□□□ 0.17
HMGA1-203ENST00000374116 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
HMGA1-203ENST00000374116 COA7Q96BR5 231 aa16.11■□□□□ 0.17
HMGA1-203ENST00000374116 CLIC6Q96NY7 704 aa16.11■□□□□ 0.17
HMGA1-203ENST00000374116 KCNH3Q9ULD8 1083 aa16.11■□□□□ 0.17
HMGA1-203ENST00000374116 HTTP42858 3142 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 PTPREP23469 700 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 PSMC4P43686 418 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 GNAQP50148 359 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 PFKFB3Q16875 520 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-203ENST00000374116 MUM1L1Q5H9M0 696 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 GPKOWQ92917 476 aaPredicted RBP eCLIP16.1■□□□□ 0.173e-8■■■■□ 26
HMGA1-203ENST00000374116 TRIM47Q96LD4 638 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 SPZ1Q9BXG8 430 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 TEX13BQ9BXU2 312 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 HOOK1Q9UJC3 728 aaKnown RBP16.1■□□□□ 0.17
HMGA1-203ENST00000374116 IKBKBO14920 756 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 ZBTB5O15062 677 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 FKTNO75072 461 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 KRT2P35908 639 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 KRBA2Q6ZNG9 492 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 MTMR8Q96EF0 704 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 RRP36Q96EU6 259 aaKnown RBP16.1■□□□□ 0.17
HMGA1-203ENST00000374116 FBXO2Q9UK22 296 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-203ENST00000374116 PCDHB6Q9Y5E3 794 aa16.1■□□□□ 0.17
HMGA1-203ENST00000374116 MGAMO43451 1857 aa16.09■□□□□ 0.17
HMGA1-203ENST00000374116 BIN1O00499 593 aa16.09■□□□□ 0.17
HMGA1-203ENST00000374116 ICAM1P05362 532 aa16.09■□□□□ 0.17
HMGA1-203ENST00000374116 SCG2P13521 617 aa16.09■□□□□ 0.17
HMGA1-203ENST00000374116 EARS2Q5JPH6 523 aaKnown RBP16.09■□□□□ 0.17
HMGA1-203ENST00000374116 GTF3C2Q8WUA4 911 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-203ENST00000374116 TRERF1Q96PN7 1200 aa16.09■□□□□ 0.17
HMGA1-203ENST00000374116 CCDC144BQ3MJ40 725 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 GPR142Q7Z601 462 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 FBXO11Q86XK2 927 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 RIOX2Q8IUF8 465 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 CNNM3Q8NE01 707 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 TBC1D5Q92609 795 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 LZTS2Q9BRK4 669 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 BRMS1Q9HCU9 246 aa16.08■□□□□ 0.17
HMGA1-203ENST00000374116 SRPRBQ9Y5M8 271 aaKnown RBP16.08■□□□□ 0.17
HMGA1-203ENST00000374116 PNMA6FA0A0J9YX94 578 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 NFIBO00712 420 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 TNPO2O14787 897 aaKnown RBP16.08■□□□□ 0.16
HMGA1-203ENST00000374116 CTCFP49711 727 aaPredicted RBP16.08■□□□□ 0.16
HMGA1-203ENST00000374116 LONRF3Q496Y0 759 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 TNS4Q8IZW8 715 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 CCDC112Q8NEF3 446 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 PURBQ96QR8 312 aaKnown RBP16.08■□□□□ 0.16
HMGA1-203ENST00000374116 SH3GLB2Q9NR46 395 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 RNF146Q9NTX7 359 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 SEC63Q9UGP8 760 aaKnown RBP16.08■□□□□ 0.16
HMGA1-203ENST00000374116 GABRQQ9UN88 632 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 PCDHA1Q9Y5I3 950 aa16.08■□□□□ 0.16
HMGA1-203ENST00000374116 FAM205CA6NFA0 338 aa16.07■□□□□ 0.16
HMGA1-203ENST00000374116 ATP2A1O14983 1001 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms