RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 NIM1KQ8IY84 436 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 FAM114A2Q9NRY5 505 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 AFG3L2Q9Y4W6 797 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 HEXIM1O94992 359 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 CCNE1P24864 410 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 IRX4P78413 519 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 GOLGA8FQ08AF8 430 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 GOLGA8DPQ0D2H9 430 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 BFSP1Q12934 665 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 PABPC4Q13310 644 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 MCF2L2Q86YR7 1114 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 PPP4R1Q8TF05 950 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SPTLC3Q9NUV7 552 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 INTS9Q9NV88 658 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 DAAM1Q9Y4D1 1078 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 TMEM232C9JQI7 657 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 KIF3CO14782 793 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 CYP27B1O15528 508 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SASH1O94885 1247 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SLC8A1P32418 973 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 RASGRP4Q8TDF6 673 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 RIOK1Q9BRS2 568 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SAMSN1Q9NSI8 373 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SRPRBQ9Y5M8 271 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SH2B2O14492 632 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SEC31AO94979 1220 aaKnown RBP12.47□□□□□ -0.41
PTPRF-203ENST00000372407 ARHGAP4P98171 946 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 POLA2Q14181 598 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 EPB41L5Q9HCM4 733 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 ZSWIM5Q9P217 1185 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 ZBTB1Q9Y2K1 713 aa12.47□□□□□ -0.41
PTPRF-203ENST00000372407 SUN1O94901 812 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 ZWINTO95229 277 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 CLTAP09496 248 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 MESDQ14696 234 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 ARHGEF16Q5VV41 709 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 SCYL2Q6P3W7 929 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 GRAMD1CQ8IYS0 662 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 NT5C1BQ96P26 610 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 HESX1Q9UBX0 185 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 JRKLQ9Y4A0 524 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 M0R2C6 588 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 COBLO75128 1261 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 LMNB2Q03252 620 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 PI4K2BQ8TCG2 481 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 MLXIPQ9HAP2 919 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 LEMD3Q9Y2U8 911 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 RIPOR2Q9Y4F9 1068 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 ARHGAP23Q9P227 1491 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 TMEM131LA2VDJ0 1609 aa12.46□□□□□ -0.41
PTPRF-203ENST00000372407 TNNC2P02585 160 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 SCNN1DP51172 638 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 KRT81Q14533 505 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 HACE1Q8IYU2 909 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 PLCD3Q8N3E9 789 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 HAUS2Q9NVX0 235 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 RWDD2AQ9UIY3 292 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-203ENST00000372407 ARHGAP42A6NI28 874 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 PGRMC1O00264 195 aaKnown RBP12.46□□□□□ -0.42
PTPRF-203ENST00000372407 DMP1Q13316 513 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-203ENST00000372407 PPP2R5CQ13362 524 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 MUM1Q2TAK8 710 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 CAPN12Q6ZSI9 719 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 PUS7LQ9H0K6 701 aaKnown RBP12.46□□□□□ -0.42
PTPRF-203ENST00000372407 USH1CQ9Y6N9 552 aa12.46□□□□□ -0.42
PTPRF-203ENST00000372407 TMEM191BP0C7N4 346 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 POMGNT1Q8WZA1 660 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 ADPGKQ9BRR6 497 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 PARD6BQ9BYG5 372 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 SPATA31A1Q5TZJ5 1347 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 QRICH2Q9H0J4 1663 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 GAP43P17677 238 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 CDC25AP30304 524 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 PSMC2P35998 433 aaKnown RBP12.45□□□□□ -0.42
PTPRF-203ENST00000372407 IFNAR2P48551 515 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 PRKG1Q13976 671 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 RPS6KA2Q15349 733 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 LRCH2Q5VUJ6 765 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 PI16Q6UXB8 463 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 FAM186BQ8IYM0 893 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 LRRC8CQ8TDW0 803 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 TBCKQ8TEA7 893 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 EXOC4Q96A65 974 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 PANX2Q96RD6 677 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 FAN1Q9Y2M0 1017 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 DEPDC5O75140 1603 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 PRPF3O43395 683 aaKnown RBP12.45□□□□□ -0.42
PTPRF-203ENST00000372407 ZMYND10O75800 440 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 STAM2O75886 525 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 NDUFA10O95299 355 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 AFPP02771 609 aaKnown RBP12.45□□□□□ -0.42
PTPRF-203ENST00000372407 HOXA7P31268 230 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-203ENST00000372407 MFAP3P55082 362 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 ACRBPQ8NEB7 543 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 NACA2Q9H009 215 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 MST1RQ04912 1400 aa12.45□□□□□ -0.42
PTPRF-203ENST00000372407 ATP1A3P13637 1013 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 HSPA6P17066 643 aa12.44□□□□□ -0.42
PTPRF-203ENST00000372407 PTPN21Q16825 1174 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms