RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF449Q6P9G9 518 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 THAP9Q9H5L6 903 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 GPR108Q9NPR9 543 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 DDX25Q9UHL0 483 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 KIAA1024Q9UPX6 916 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 ADGRG1Q9Y653 693 aa21.25■□□□□ 0.99
CCDC88B-202ENST00000356786 CCDC93Q567U6 631 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 GABPB2Q8TAK5 448 aaPredicted RBP21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 GDAP1Q8TB36 358 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 TSC22D3Q99576 134 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 NDST4Q9H3R1 872 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 PPFIA2O75334 1257 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 GYG1P46976 350 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 CUL1Q13616 776 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 CCHCR1Q8TD31 782 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ANKRD7Q92527 254 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ARHGEF10LQ9HCE6 1279 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ABCC12Q96J65 1359 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ECEL1O95672 775 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 CYP4A11Q02928 519 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 SNX1Q13596 522 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 SLMAPQ14BN4 828 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 TMED2Q15363 201 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 LRRC23Q53EV4 343 aaPredicted RBP21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 AK8Q96MA6 479 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ZMYND12Q9H0C1 365 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ABHD10Q9NUJ1 306 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 IGSF1Q8N6C5 1336 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 LAD1O00515 517 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 KRT19P08727 400 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 SLC12A2P55011 1212 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 YWHAGP61981 247 aaKnown RBP eCLIP21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 ARMCX5Q6P1M9 558 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 TMEM94Q12767 1356 aa21.24■□□□□ 0.99
CCDC88B-202ENST00000356786 TTC36A6NLP5 189 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 SH2B2O14492 632 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 SASH1O94885 1247 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 WDR24Q96S15 920 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 C1orf112Q9NSG2 853 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 E9PCH4 1651 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 INHBAP08476 426 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 SGO2Q562F6 1265 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 CPXCR1Q8N123 301 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 RNF34Q969K3 372 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 BPIFA3Q9BQP9 254 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 MRFAP1Q9Y605 127 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 MYL1P05976 194 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 NPHP4O75161 1426 aaPredicted RBP21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 SPECC1L-ADORA2AF8WAN1 911 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 RESP18Q5W5W9 173 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 OTUD6AQ7L8S5 288 aa21.23■□□□□ 0.99
CCDC88B-202ENST00000356786 FRMPD2Q68DX3 1309 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 SEMA3EO15041 775 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 NSFP46459 744 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 POLA2Q14181 598 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 RPS6KA2Q15349 733 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 HADHQ16836 314 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 GLE1Q53GS7 698 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 MMEP08473 750 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 MADDQ8WXG6 1647 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 PDE8BO95263 885 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 SERPING1P05155 500 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 HSPA6P17066 643 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 GDAQ9Y2T3 454 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 ANO9A1A5B4 782 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 AFPP02771 609 aaKnown RBP21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 ZSWIM5Q9P217 1185 aa21.22■□□□□ 0.99
CCDC88B-202ENST00000356786 MX2P20592 715 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 DR1Q01658 176 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 C6orf118Q5T5N4 469 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 ABTB1Q969K4 478 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 PUS7LQ9H0K6 701 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 ANAPC5Q9UJX4 755 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 TTLL3Q9Y4R7 772 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 K7ENM7 598 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 TMTC3Q6ZXV5 915 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 PTCH1Q13635 1447 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 LRRN2O75325 713 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 DLATP10515 647 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 PTPREP23469 700 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 SLFN12Q8IYM2 578 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 YIPF3Q9GZM5 350 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 PCDHA4Q9UN74 947 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 MAP3K7O43318 606 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 LMNB2Q03252 620 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 RBM26Q5T8P6 1007 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 PI16Q6UXB8 463 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 NLRP7Q8WX94 980 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 MAD1L1Q9Y6D9 718 aa21.21■□□□□ 0.99
CCDC88B-202ENST00000356786 H0Y3Z8 333 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 VSNL1P62760 191 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 PABPC4Q13310 644 aaKnown RBP eCLIP21.2■□□□□ 0.982e-9■■□□□ 12.8
CCDC88B-202ENST00000356786 E4F1Q66K89 784 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 DHX40Q8IX18 779 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 ZBTB38Q8NAP3 1195 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 COG1Q8WTW3 980 aa21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.2■□□□□ 0.98
CCDC88B-202ENST00000356786 GGA1Q9UJY5 639 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms