RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SYDE2Q5VT97 1194 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 HEATR3Q7Z4Q2 680 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 CCDC12Q8WUD4 166 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 PLCD4Q9BRC7 762 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 FAM204AQ9H8W3 233 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 L2HGDHQ9H9P8 463 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 TMEM232C9JQI7 657 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 AP1G2O75843 785 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 TOB1P50616 345 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 MAP3K9P80192 1104 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 SPICE1Q8N0Z3 855 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 C12orf42Q96LP6 360 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 IRX2Q9BZI1 471 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 AS3MTQ9HBK9 375 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 SNCAIPQ9Y6H5 919 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 YEATS4O95619 227 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 PPP2R3AQ06190 1150 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 KARSQ15046 597 aaKnown RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 EARS2Q5JPH6 523 aaKnown RBP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 FAM83BQ5T0W9 1011 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 BLIDQ8IZY5 108 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 LINC00301Q8NCQ3 95 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 FTOQ9C0B1 505 aaKnown RBP eCLIP11.3□□□□□ -0.6
SYNE1-203ENST00000354674 EMILIN3Q9NT22 766 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 FEM1BQ9UK73 627 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 CLIC4Q9Y696 253 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 CAPN7Q9Y6W3 813 aa11.3□□□□□ -0.6
SYNE1-203ENST00000354674 WDR46O15213 610 aaKnown RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 SFPQP23246 707 aaKnown RBP eCLIP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 STAT2P52630 851 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 USP14P54578 494 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 BACE1P56817 501 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 RILPL1Q5EBL4 403 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 FAM160B2Q86V87 743 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 ZNF280CQ8ND82 737 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 WDR24Q96S15 920 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 CEP89Q96ST8 783 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 IFNKQ9P0W0 207 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 PRR12Q9ULL5 1215 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 AFG3L2Q9Y4W6 797 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 PARP14Q460N5 1801 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 PPP1R12BO60237 982 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 MYBL1P10243 752 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 ETF1P62495 437 aaKnown RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 PTPAQ15257 358 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 CDC37Q16543 378 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 QRICH1Q2TAL8 776 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 HSP90B2PQ58FF3 399 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 ANO1Q5XXA6 986 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 ARMCX5Q6P1M9 558 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 SUGP1Q8IWZ8 645 aaKnown RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 CHURC1Q8WUH1 139 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 PCDHA6Q9UN73 950 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 PCDHA8Q9Y5H6 950 aa11.29□□□□□ -0.6
SYNE1-203ENST00000354674 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-203ENST00000354674 EIF4E1BA6NMX2 242 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 RAD21O60216 631 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 CDC25CP30307 473 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 CCNHP51946 323 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 NAPAP54920 295 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 VGLL4Q14135 290 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 EAPPQ56P03 285 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 FKBP15Q5T1M5 1219 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 SWT1Q5T5J6 900 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 RANBP17Q9H2T7 1088 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 SMCO2A6NFE2 343 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 C19orf81C9J6K1 198 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 GNA11P29992 359 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 RDXP35241 583 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 IREB2P48200 963 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 MTMR2Q13614 643 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 SLC39A14Q15043 492 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 SH3D19Q5HYK7 790 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 EFCAB13Q8IY85 973 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 MIEF2Q96C03 454 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 BORCS6Q96GS4 357 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 POTEIP0CG38 1075 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 POTEJP0CG39 1038 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 TRAPPC10P48553 1259 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 CLK2P49760 499 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 INHBEP58166 350 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 SPP2Q13103 211 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 E2F5Q15329 346 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 COA7Q96BR5 231 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 PGBD1Q96JS3 809 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 XPO4Q9C0E2 1151 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 C6orf50Q9HD87 102 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 RIC8AQ9NPQ8 531 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.28□□□□□ -0.6
SYNE1-203ENST00000354674 ZHX2Q9Y6X8 837 aa11.28□□□□□ -0.6
SYNE1-203ENST00000354674 UNCXA6NJT0 531 aa11.27□□□□□ -0.6
SYNE1-203ENST00000354674 ZYXQ15942 572 aaKnown RBP11.27□□□□□ -0.6
SYNE1-203ENST00000354674 FAXDC2Q96IV6 333 aa11.27□□□□□ -0.6
SYNE1-203ENST00000354674 UBXN6Q9BZV1 441 aa11.27□□□□□ -0.6
SYNE1-203ENST00000354674 RRAGCQ9HB90 399 aa11.27□□□□□ -0.6
SYNE1-203ENST00000354674 RLFQ13129 1914 aa11.27□□□□□ -0.61
SYNE1-203ENST00000354674 A0A087WUV0 522 aaPredicted RBP11.27□□□□□ -0.61
SYNE1-203ENST00000354674 FAM205CA6NFA0 338 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms