RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 hCG_1984214I3L0E3 225 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 GCNT3O95395 438 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 CD44P16070 742 aaKnown RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 BMP6P22004 513 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 NT5C2P49902 561 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 SEPT14Q6ZU15 432 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 ZNF713Q8N859 430 aaPredicted RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 DCAF8L1A6NGE4 600 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 MATR3P43243 847 aaKnown RBP eCLIP12.38□□□□□ -0.43
SVIP-201ENST00000354193 TBC1D8BQ0IIM8 1120 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 STK4Q13043 487 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 DCAF17Q5H9S7 520 aaPredicted RBP12.38□□□□□ -0.43
SVIP-201ENST00000354193 MIER3Q7Z3K6 550 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 CCDC65Q8IXS2 484 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 PANK4Q9NVE7 773 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 FEM1BQ9UK73 627 aa12.38□□□□□ -0.43
SVIP-201ENST00000354193 BCORQ6W2J9 1755 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 ARHGEF35A5YM69 484 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 TEX33O43247 280 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 CLCN1P35523 988 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 DNA2P51530 1060 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 PTPN14Q15678 1187 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 DESI2Q9BSY9 194 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 DEF6Q9H4E7 631 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 MRPL44Q9H9J2 332 aaKnown RBP12.37□□□□□ -0.43
SVIP-201ENST00000354193 LAD1O00515 517 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 PLA2G4BP0C869 781 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 CNNM4Q6P4Q7 775 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 CACNA2D4Q7Z3S7 1137 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 TSC1Q92574 1164 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 NOC4LQ9BVI4 516 aaKnown RBP12.37□□□□□ -0.43
SVIP-201ENST00000354193 RPS6P62753 249 aaKnown RBP12.37□□□□□ -0.43
SVIP-201ENST00000354193 FKBP15Q5T1M5 1219 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 AK8Q96MA6 479 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 CCDC88AQ3V6T2 1871 aa12.37□□□□□ -0.43
SVIP-201ENST00000354193 KCNJ18B7U540 433 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 CTNND1O60716 968 aaKnown RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 USP14P54578 494 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 KCNJ12Q14500 433 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 FAM26FQ5R3K3 315 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 SPATA1Q5VX52 437 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 ZBTB9Q96C00 473 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 GMCL1Q96IK5 515 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 TUBE1Q9UJT0 475 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 IGKV6D-41A0A0C4DH26 115 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 CCDC169A6NNP5 214 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 FAM86B1E9PN63 330 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 USO1O60763 962 aaKnown RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 FAM86B2P0C5J1 330 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 GCFC2P16383 781 aaKnown RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 GSDMDP57764 484 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 KCNK18Q7Z418 384 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 LZTFL1Q9NQ48 299 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 FAM207AQ9NSI2 230 aaPredicted RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 PCDHB13Q9Y5F0 798 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 LY75O60449 1722 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 ZBTB39O15060 712 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 TDRD12Q587J7 1177 aaKnown RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 NLRX1Q86UT6 975 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 SLFN12Q8IYM2 578 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 TRIM9Q9C026 710 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.36□□□□□ -0.43
SVIP-201ENST00000354193 V9GYY5 206 aaPredicted RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 MYMKA6NI61 221 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 DPYDQ12882 1025 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 RBM43Q6ZSC3 357 aaKnown RBP12.36□□□□□ -0.43
SVIP-201ENST00000354193 MKL1Q969V6 931 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 DYDC2Q96IM9 177 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 CLMNQ96JQ2 1002 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 TAAR1Q96RJ0 339 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 RABGAP1Q9Y3P9 1069 aa12.36□□□□□ -0.43
SVIP-201ENST00000354193 IPO5O00410 1097 aaKnown RBP12.35□□□□□ -0.43
SVIP-201ENST00000354193 MEIS2O14770 477 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 CLIC2O15247 247 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 NT5C3AQ9H0P0 336 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 ZNHIT6Q9NWK9 470 aaKnown RBP12.35□□□□□ -0.43
SVIP-201ENST00000354193 SNHG28P0DPA3 235 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 HARSP12081 509 aaKnown RBP12.35□□□□□ -0.43
SVIP-201ENST00000354193 IREB2P48200 963 aaKnown RBP12.35□□□□□ -0.43
SVIP-201ENST00000354193 ZNF658Q5TYW1 1059 aaPredicted RBP12.35□□□□□ -0.43
SVIP-201ENST00000354193 SCYL3Q8IZE3 742 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 LAMB2P55268 1798 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 ESYT2A0FGR8 921 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 ARP10275 920 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 BACE1P56817 501 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 AP3B2Q13367 1082 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 CEP55Q53EZ4 464 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 LRRC8AQ8IWT6 810 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 TRIML1Q8N9V2 468 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 DAGLBQ8NCG7 672 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 SLC10A4Q96EP9 437 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 ZSWIM4Q9H7M6 989 aa12.35□□□□□ -0.43
SVIP-201ENST00000354193 SEPT11Q9NVA2 429 aaKnown RBP12.35□□□□□ -0.43
SVIP-201ENST00000354193 B4DLN1 442 aa12.34□□□□□ -0.43
SVIP-201ENST00000354193 PRPF6O94906 941 aaKnown RBP12.34□□□□□ -0.43
SVIP-201ENST00000354193 PSMC6P62333 389 aa12.34□□□□□ -0.43
SVIP-201ENST00000354193 GPC2Q8N158 579 aa12.34□□□□□ -0.43
SVIP-201ENST00000354193 MRFAP1L1Q96HT8 127 aa12.34□□□□□ -0.43
SVIP-201ENST00000354193 NLRC4Q9NPP4 1024 aa12.34□□□□□ -0.43
SVIP-201ENST00000354193 GINS2Q9Y248 185 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms