RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MYL1P05976 194 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 H2AFXP16104 143 aaPredicted RBP11.53□□□□□ -0.56
LIMA1-201ENST00000341247 DNM2P50570 870 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 DACT2Q5SW24 774 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 WDR59Q6PJI9 974 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 TMCO3Q6UWJ1 677 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 PRMT6Q96LA8 375 aaPredicted RBP11.53□□□□□ -0.56
LIMA1-201ENST00000341247 ZDHHC15Q96MV8 337 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 HDAC6Q9UBN7 1215 aa11.53□□□□□ -0.56
LIMA1-201ENST00000341247 CTAGE9A4FU28 777 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 F5H6K3 240 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 C21orf2O43822 256 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 PLEKP08567 350 aaPredicted RBP11.52□□□□□ -0.56
LIMA1-201ENST00000341247 ARHGAP25P42331 645 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 FXR2P51116 673 aaKnown RBP eCLIP11.52□□□□□ -0.56
LIMA1-201ENST00000341247 KLRC3Q07444 240 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 KIAA1328Q86T90 577 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 SIAH1Q8IUQ4 282 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 ZHX1Q9UKY1 873 aaPredicted RBP11.52□□□□□ -0.56
LIMA1-201ENST00000341247 PLIN4Q96Q06 1357 aa11.52□□□□□ -0.56
LIMA1-201ENST00000341247 RASSF10A6NK89 507 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 EPHB6O15197 1021 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 KRT18P05783 430 aaKnown RBP11.52□□□□□ -0.57
LIMA1-201ENST00000341247 RHOXF2BP0C7M4 288 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 ABCB5Q2M3G0 1257 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 KRT26Q7Z3Y9 468 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 P2RX7Q99572 595 aaKnown RBP11.52□□□□□ -0.57
LIMA1-201ENST00000341247 RHOXF2Q9BQY4 288 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 ANO3Q9BYT9 981 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 GREB1LQ9C091 1923 aaPredicted RBP11.52□□□□□ -0.57
LIMA1-201ENST00000341247 YDJCA8MPS7 323 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 ZSCAN20P17040 1043 aaPredicted RBP11.52□□□□□ -0.57
LIMA1-201ENST00000341247 CHMP4BP1P59074 171 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 EN1Q05925 392 aaPredicted RBP11.52□□□□□ -0.57
LIMA1-201ENST00000341247 TRIM14Q14142 442 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 ENOX2Q16206 610 aaKnown RBP11.52□□□□□ -0.57
LIMA1-201ENST00000341247 MIIPQ5JXC2 388 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 CCDC122Q5T0U0 273 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 NCAPH2Q6IBW4 605 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 UNC13DQ70J99 1090 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 CDAN1Q8IWY9 1227 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 PARD6BQ9BYG5 372 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 MAGEF1Q9HAY2 307 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 DUSP10Q9Y6W6 482 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 MYH4Q9Y623 1939 aa11.52□□□□□ -0.57
LIMA1-201ENST00000341247 MACROD2A1Z1Q3 448 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 POTEFA5A3E0 1075 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 hCG_1984214I3L0E3 225 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 PPIP5K2O43314 1243 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 SRGAP2O75044 1071 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 RAD17O75943 681 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 POTEIP0CG38 1075 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 UBXN2AP68543 259 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CYP4A11Q02928 519 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 FKBP15Q5T1M5 1219 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 POTEGQ6S5H5 508 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 POTEEQ6S8J3 1075 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 KRT222Q8N1A0 295 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 ZNF713Q8N859 430 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 SMCR8Q8TEV9 937 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CSRNP1Q96S65 589 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 ARGLU1Q9NWB6 273 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 NDUFB10O96000 172 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 ECE1P42892 770 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 STRIP1Q5VSL9 837 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CYP2W1Q8TAV3 490 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CAPZA3Q96KX2 299 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CCDC17Q96LX7 622 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CRACR2AQ9BSW2 395 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CAPN11Q9UMQ6 739 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 TRAF5O00463 557 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CLK2P49760 499 aaKnown RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 APBA1Q02410 837 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 COASYQ13057 564 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 CCDC84Q86UT8 332 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 C7orf43Q8WVR3 580 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 DRC1Q96MC2 740 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 NAPGQ99747 312 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 PANK4Q9NVE7 773 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 ZNHIT6Q9NWK9 470 aaKnown RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 STK17AQ9UEE5 414 aa11.51□□□□□ -0.57
LIMA1-201ENST00000341247 ZBTB12Q9Y330 459 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-201ENST00000341247 HERVK_113P62684 666 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 FAM114A1Q8IWE2 563 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 SMAP1Q8IYB5 467 aaPredicted RBP11.5□□□□□ -0.57
LIMA1-201ENST00000341247 GOLGA1Q92805 767 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 HINFPQ9BQA5 517 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 LACRTQ9GZZ8 138 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 NHEJ1Q9H9Q4 299 aaPredicted RBP11.5□□□□□ -0.57
LIMA1-201ENST00000341247 CDC23Q9UJX2 597 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 RCCD1A6NED2 376 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 HERC4Q5GLZ8 1057 aaPredicted RBP11.5□□□□□ -0.57
LIMA1-201ENST00000341247 POTEAQ6S8J7 498 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 GPBP1Q86WP2 473 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 A0A1W2PQC6 194 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 A0A1W2PRG0 241 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 POLR3GO15318 223 aaPredicted RBP11.5□□□□□ -0.57
LIMA1-201ENST00000341247 PNMA6AP0CW24 399 aaPredicted RBP11.5□□□□□ -0.57
LIMA1-201ENST00000341247 PSMC6P62333 389 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 PABPC4Q13310 644 aaKnown RBP eCLIP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms