RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ARID5BQ14865 1188 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 TRMT1LQ7Z2T5 733 aaKnown RBP18.54■□□□□ 0.56
USP4-201ENST00000265560 FILIP1Q7Z7B0 1213 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 NFE2L3Q9Y4A8 694 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 GLTPD2A6NH11 291 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 ESPNB1AK53 854 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 E9PMD0 336 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 DDX39AO00148 427 aaKnown RBP18.54■□□□□ 0.56
USP4-201ENST00000265560 PLA2G6O60733 806 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 EIF2AK2P19525 551 aaKnown RBP18.54■□□□□ 0.56
USP4-201ENST00000265560 PLA2G4DQ86XP0 818 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 ETNPPLQ8TBG4 499 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 TRERF1Q96PN7 1200 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 KIAA1024Q9UPX6 916 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 CSADQ9Y600 493 aa18.54■□□□□ 0.56
USP4-201ENST00000265560 PIK3CDO00329 1044 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 GCFC2P16383 781 aaKnown RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 PTGS1P23219 599 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 ELOA2Q8IYF1 753 aaPredicted RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 C17orf53Q8N3J3 647 aaPredicted RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 GSDMAQ96QA5 445 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 XPO4Q9C0E2 1151 aaKnown RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 KBTBD4Q9NVX7 518 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 TMOD4Q9NZQ9 345 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 POTEFA5A3E0 1075 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 ARP10275 920 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 RPS6P62753 249 aaKnown RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 KMT5BQ4FZB7 885 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 SNRNP48Q6IEG0 339 aaKnown RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 POTEGQ6S5H5 508 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 POTEEQ6S8J3 1075 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 TAAR1Q96RJ0 339 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.53■□□□□ 0.56
USP4-201ENST00000265560 CTNND2Q9UQB3 1225 aa18.53■□□□□ 0.56
USP4-201ENST00000265560 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.53■□□□□ 0.56
USP4-201ENST00000265560 ZBED4O75132 1171 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 ASIC1P78348 528 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 MKRN3Q13064 507 aaKnown RBP18.52■□□□□ 0.56
USP4-201ENST00000265560 CCDC144BQ3MJ40 725 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 GADL1Q6ZQY3 521 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 CCDC186Q7Z3E2 898 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 RAB34Q9BZG1 259 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 PPP2R3BQ9Y5P8 575 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 MED24O75448 989 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 MLKLQ8NB16 471 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 TAF1DQ9H5J8 278 aaPredicted RBP18.52■□□□□ 0.56
USP4-201ENST00000265560 RGL1Q9NZL6 768 aa18.52■□□□□ 0.56
USP4-201ENST00000265560 PITPNM2Q9BZ72 1349 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 IGLV3-22A0A075B6J6 115 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 CYP3A7-CYP3A51PA0A087WV96 503 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 MYMKA6NI61 221 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 PPP1R3GB7ZBB8 358 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 FCER1AP12319 257 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 MYCLP12524 364 aaPredicted RBP18.52■□□□□ 0.55
USP4-201ENST00000265560 IDEP14735 1019 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 CYP3A7P24462 503 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 PSMC6P62333 389 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 TMEM132BQ14DG7 1078 aa18.52■□□□□ 0.55
USP4-201ENST00000265560 ZNF526Q8TF50 670 aaPredicted RBP18.52■□□□□ 0.55
USP4-201ENST00000265560 COL11A1P12107 1806 aaPredicted RBP18.51■□□□□ 0.55
USP4-201ENST00000265560 NPHP3-ACAD11A0A0J9YXS1 232 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 EML1O00423 815 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 PDIA5Q14554 519 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 BPIFA3Q9BQP9 254 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 TRIM49BA6NDI0 452 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 SMTNL1A8MU46 457 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 SERPINC1P01008 464 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 PRCPP42785 496 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 FANCCQ00597 558 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 LRMPQ12912 555 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 COG2Q14746 738 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 TRIM9Q9C026 710 aa18.51■□□□□ 0.55
USP4-201ENST00000265560 ZBTB39O15060 712 aa18.5■□□□□ 0.55
USP4-201ENST00000265560 KLRC4O43908 158 aa18.5■□□□□ 0.55
USP4-201ENST00000265560 CDK11BP21127 795 aaKnown RBP18.5■□□□□ 0.55
USP4-201ENST00000265560 LARP4BQ92615 738 aaKnown RBP18.5■□□□□ 0.55
USP4-201ENST00000265560 NAP1L5Q96NT1 182 aaPredicted RBP18.5■□□□□ 0.55
USP4-201ENST00000265560 WDR11Q9BZH6 1224 aa18.5■□□□□ 0.55
USP4-201ENST00000265560 R3HDMLQ9H3Y0 253 aa18.5■□□□□ 0.55
USP4-201ENST00000265560 RNF146Q9NTX7 359 aa18.5■□□□□ 0.55
USP4-201ENST00000265560 PHIPQ8WWQ0 1821 aa18.5■□□□□ 0.55
USP4-201ENST00000265560 ORC2Q13416 577 aaPredicted RBP18.5■□□□□ 0.55
USP4-201ENST00000265560 BAATQ14032 418 aaPredicted RBP18.5■□□□□ 0.55
USP4-201ENST00000265560 SORBS3O60504 671 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 SPIRE1Q08AE8 756 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 SV2BQ7L1I2 683 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 CATSPER3Q86XQ3 398 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 SYTL5Q8TDW5 730 aaPredicted RBP18.49■□□□□ 0.55
USP4-201ENST00000265560 GINM1Q9NU53 330 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 TBC1D7Q9P0N9 293 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 PDE4DQ08499 809 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 STK4Q13043 487 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 CATSPERGQ6ZRH7 1159 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 L3MBTL3Q96JM7 780 aaPredicted RBP18.49■□□□□ 0.55
USP4-201ENST00000265560 MBOAT7Q96N66 472 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 PYM1Q9BRP8 204 aaKnown RBP18.49■□□□□ 0.55
USP4-201ENST00000265560 SLC39A2Q9NP94 309 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 C19orf81C9J6K1 198 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 IKBKBO14920 756 aa18.49■□□□□ 0.55
USP4-201ENST00000265560 ITGB5P18084 799 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms