RNA–Protein interactions for RNA: ENST00000261037.7

COL8A1-201, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL8A1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-201ENST00000261037 CDC25AP30304 524 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 NT5C1BQ96P26 610 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 CCDC68Q9H2F9 335 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 ZNF277Q9NRM2 450 aaPredicted RBP13.18□□□□□ -0.3
COL8A1-201ENST00000261037 RIPOR2Q9Y4F9 1068 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 PTK2Q05397 1052 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 GABPB1Q06547 395 aaPredicted RBP13.18□□□□□ -0.3
COL8A1-201ENST00000261037 PRPSAP1Q14558 356 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 MIS18BP1Q6P0N0 1132 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 ZNF653Q96CK0 615 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 PASKQ96RG2 1323 aa13.18□□□□□ -0.3
COL8A1-201ENST00000261037 ERVK-7P63135 1459 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 FAM135BQ49AJ0 1406 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 INO80B-WBP1J3KQ70 363 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 INO80BQ9C086 356 aaPredicted RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 TYW1Q9NV66 732 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 MOCS3O95396 460 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 USP17L8P0C7I0 530 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 GARSP41250 739 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 PUS7LQ9H0K6 701 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 PDE11AQ9HCR9 933 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 FIS1Q9Y3D6 152 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 NUB1Q9Y5A7 615 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 ESYT2A0FGR8 921 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 AFPP02771 609 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 RBM6P78332 1123 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 FAM133AQ8N9E0 248 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 FAM71BQ8TC56 605 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 CHMP6Q96FZ7 201 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 NBPF3Q9H094 633 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 HOMER3Q9NSC5 361 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 FNDC3AQ9Y2H6 1198 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 ZNF853P0CG23 659 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 KRT3P12035 628 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 CXCR5P32302 372 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 PSMC2P35998 433 aaKnown RBP13.17□□□□□ -0.3
COL8A1-201ENST00000261037 ZSCAN26Q16670 478 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 NLRP7Q8WX94 980 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 CNKSR1Q969H4 720 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 MAN1B1Q9UKM7 699 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 ERCC6L2Q5T890 1561 aa13.17□□□□□ -0.3
COL8A1-201ENST00000261037 OPHN1O60890 802 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 SERPINB2P05120 415 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 CYP21A2P08686 494 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 ACTN1P12814 892 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 CCND2P30279 289 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 POLR2BP30876 1174 aaKnown RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 MAPK4P31152 587 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 IFNAR2P48551 515 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 MMEL1Q495T6 779 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 ASPRV1Q53RT3 343 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 QTRT2Q9H974 415 aaKnown RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 ABCF3Q9NUQ8 709 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 RAD17O75943 681 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 GFPT2O94808 682 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 RASSF2P50749 326 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 DPCR1Q3MIW9 517 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 APOA5Q6Q788 366 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 USP17L2Q6R6M4 530 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 SCARA5Q6ZMJ2 495 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 FAM196AQ6ZSG2 479 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 LRRC8CQ8TDW0 803 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 CPSF2Q9P2I0 782 aaKnown RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 PCDHA5Q9Y5H7 936 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 EFCAB8A8MWE9 144 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 CIAO1O76071 339 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 NR5A1Q13285 461 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 SLC12A1Q13621 1099 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 TRIP13Q15645 432 aaPredicted RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 MAP4K1Q92918 833 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 HAUS4Q9H6D7 363 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 KRT1P04264 644 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 TCP1P17987 556 aaKnown RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 LMNB1P20700 586 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 SERPINB6P35237 376 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 DDIT3P35638 169 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 RCN2Q14257 317 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 MTERF2Q49AM1 385 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 FAM186BQ8IYM0 893 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 FLAD1Q8NFF5 587 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 ACCSQ96QU6 501 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 SNX25Q9H3E2 840 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 ANAPC5Q9UJX4 755 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 NPHP4O75161 1426 aaPredicted RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 FTCDO95954 541 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 S100BP04271 92 aaPredicted RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 OSBPP22059 807 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 CCNYQ8ND76 341 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 NSUN7Q8NE18 718 aaKnown RBP13.16□□□□□ -0.3
COL8A1-201ENST00000261037 CFAP61Q8NHU2 1237 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 P2RX5Q93086 422 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 PLEKHF1Q96S99 279 aa13.16□□□□□ -0.3
COL8A1-201ENST00000261037 SEMA3EO15041 775 aa13.15□□□□□ -0.3
COL8A1-201ENST00000261037 ADD2P35612 726 aa13.15□□□□□ -0.3
COL8A1-201ENST00000261037 FOXP1Q9H334 677 aaPredicted RBP13.15□□□□□ -0.3
COL8A1-201ENST00000261037 KDM5CP41229 1560 aa13.15□□□□□ -0.3
COL8A1-201ENST00000261037 ATP10DQ9P241 1426 aa13.15□□□□□ -0.3
COL8A1-201ENST00000261037 USP17L3A6NCW0 530 aa13.15□□□□□ -0.3
COL8A1-201ENST00000261037 USP17L4A6NCW7 530 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms