RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TRIM21P19474 475 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CASP14P31944 242 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ACTN2P35609 894 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CCT6AP40227 531 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 USP8P40818 1118 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ATP2C1P98194 919 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 KIF5AQ12840 1032 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 NR5A1Q13285 461 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 NPY5RQ15761 445 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 TMEM31Q5JXX7 168 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC122Q5T0U0 273 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 APOBEC3FQ8IUX4 373 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC170Q8IYT3 715 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 LCORLQ8N3X6 602 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 MIGA1Q8NAN2 632 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 MSANTD4Q8NCY6 345 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CALML4Q96GE6 196 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 DHTKD1Q96HY7 919 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 PHF20Q9BVI0 1012 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ANKRD2Q9GZV1 360 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 VIPAS39Q9H9C1 493 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 RNF186Q9NXI6 227 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 KCNH4Q9UQ05 1017 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 EPN1Q9Y6I3 576 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SHTN1A0MZ66 631 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TBC1D8O95759 1140 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 RHOXF2BP0C7M4 288 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 FGFR2P21802 821 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 USP5P45974 858 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA8FQ08AF8 430 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 GOLGA8DPQ0D2H9 430 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 DPYDQ12882 1025 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 KRT31Q15323 416 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TMEM266Q2M3C6 531 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TCP11X2Q5H9J9 407 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CDKAL1Q5VV42 579 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TMTC3Q6ZXV5 915 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 SLC35F6Q8N357 371 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 AFAP1L1Q8TED9 768 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 JAKMIP2Q96AA8 810 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 AK8Q96MA6 479 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 RHOXF2Q9BQY4 288 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 VPS16Q9H269 839 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 EPB41L4AQ9HCS5 686 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 BSDC1Q9NW68 430 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TAB2Q9NYJ8 693 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TSKSQ9UJT2 592 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 JAG2Q9Y219 1238 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 SAR1BQ9Y6B6 198 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 WDR81Q562E7 1941 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ANO9A1A5B4 782 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TARSL2A2RTX5 802 aaKnown RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 PPP1R12BO60237 982 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ITGBL1O95965 494 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 LDHCP07864 332 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 FECHP22830 423 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 MCM7P33993 719 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CDR1P51861 262 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 PTGDRQ13258 359 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 PIK3AP1Q6ZUJ8 805 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 NECAB2Q7Z6G3 386 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC155Q8N6L0 562 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 KIFC2Q96AC6 838 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ATP8A2Q9NTI2 1148 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ABHD10Q9NUJ1 306 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 RAB21Q9UL25 225 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 GUCA1BQ9UMX6 200 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 LGALS16A8MUM7 142 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ORC4O43929 436 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 MARCH6O60337 910 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ECM2O94769 699 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CYP19A1P11511 503 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ALADP13716 330 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TOB1P50616 345 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 HNRNPH2P55795 449 aaKnown RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ORC2Q13416 577 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CUL4BQ13620 913 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 KCNB1Q14721 858 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CYP4F22Q6NT55 531 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CNNM4Q6P4Q7 775 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CLEC4GQ6UXB4 293 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 KRT25Q7Z3Z0 450 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 GRAMD1CQ8IYS0 662 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 BLIDQ8IZY5 108 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ZNF384Q8TF68 577 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 PIGBQ92521 554 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC42Q96M95 316 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 SLF1Q9BQI6 1058 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 BMP2KQ9NSY1 1161 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 SEC63Q9UGP8 760 aaKnown RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ASAP1Q9ULH1 1129 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 SSUH2Q9Y2M2 353 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 TRIM17Q9Y577 477 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 GJA3Q9Y6H8 435 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 PSME4Q14997 1843 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ADAMTS3O15072 1205 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 NDUFA10O95299 355 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 BAG3O95817 575 aa4.43□□□□□ -1.7
SCN1A-214ENST00000637038 ZBTB48P10074 688 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-214ENST00000637038 GNA11P29992 359 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms