RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZSCAN12O43309 604 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 HOXA13P31271 388 aaPredicted RBP11.9□□□□□ -0.5
CUX1-221ENST00000622516 STAT3P40763 770 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 KCNJ6P48051 423 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 KCNB1Q14721 858 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 TMEM266Q2M3C6 531 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 SLC30A10Q6XR72 485 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 SV2BQ7L1I2 683 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 MIGA2Q7L4E1 593 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 KIAA0895Q8NCT3 520 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 ANKRD7Q92527 254 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 DUSP9Q99956 384 aaKnown RBP11.9□□□□□ -0.5
CUX1-221ENST00000622516 SERPINA10Q9UK55 444 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 MYH7BA7E2Y1 1941 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 LRRC10BA6NIK2 292 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 B4DLN1 442 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 H7C1D1 291 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 NDUFB10O96000 172 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 CLK2P49760 499 aaKnown RBP11.9□□□□□ -0.5
CUX1-221ENST00000622516 STIM1Q13586 685 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 ERCC6LQ2NKX8 1250 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 TTI2Q6NXR4 508 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 POTEAQ6S8J7 498 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 ACRBPQ8NEB7 543 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 TBC1D7Q9P0N9 293 aa11.9□□□□□ -0.5
CUX1-221ENST00000622516 SLU7O95391 586 aaKnown RBP11.89□□□□□ -0.51
CUX1-221ENST00000622516 TATDN1Q6P1N9 297 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 CCDC84Q86UT8 332 aaPredicted RBP11.89□□□□□ -0.51
CUX1-221ENST00000622516 ANKRD20A12PQ8NF67 263 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 LARP4BQ92615 738 aaKnown RBP11.89□□□□□ -0.51
CUX1-221ENST00000622516 VEZTQ9HBM0 779 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 POLD4Q9HCU8 107 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 STK32BQ9NY57 414 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 PCDHA12Q9UN75 941 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 KIF2AO00139 706 aaPredicted RBP11.89□□□□□ -0.51
CUX1-221ENST00000622516 KRT9P35527 623 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 KRT79Q5XKE5 535 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 ACER1Q8TDN7 264 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 CHP1Q99653 195 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 C7orf25Q9BPX7 421 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 TFR2Q9UP52 801 aa11.89□□□□□ -0.51
CUX1-221ENST00000622516 hCG_1984214I3L0E3 225 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 PSMD14O00487 310 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 ERVK-24P63145 666 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 KIAA1755Q5JYT7 1200 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 TEX2Q8IWB9 1127 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 ZNF713Q8N859 430 aaPredicted RBP11.88□□□□□ -0.51
CUX1-221ENST00000622516 MTMR8Q96EF0 704 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 PANX2Q96RD6 677 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 EPC1Q9H2F5 836 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 SEMA6BQ9H3T3 888 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.88□□□□□ -0.516e-7■■■■■ 48.9
CUX1-221ENST00000622516 RGS17Q9UGC6 210 aaPredicted RBP11.88□□□□□ -0.51
CUX1-221ENST00000622516 SIPA1L1O43166 1804 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 QSER1Q2KHR3 1735 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 MYO3BQ8WXR4 1341 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 NPHP3-ACAD11A0A0J9YXS1 232 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 TTC26A0AVF1 554 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 E9PMD0 336 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 MEIS2O14770 477 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 FXR2P51116 673 aaKnown RBP eCLIP11.88□□□□□ -0.51
CUX1-221ENST00000622516 PRR16Q569H4 304 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 RBM26Q5T8P6 1007 aaKnown RBP11.88□□□□□ -0.51
CUX1-221ENST00000622516 TMEM179Q6ZVK1 233 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 LARGE2Q8N3Y3 721 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 CYP2W1Q8TAV3 490 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 DDX12PQ92771 950 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 P2RX5Q93086 422 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 MKL1Q969V6 931 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 CAMKK2Q96RR4 588 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 TUBGCP2Q9BSJ2 902 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 ABHD10Q9NUJ1 306 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 NYAP2Q9P242 653 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 CCP110O43303 1012 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 HMGB2P26583 209 aaKnown RBP11.88□□□□□ -0.51
CUX1-221ENST00000622516 AMPD3Q01432 767 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 SPAG1Q07617 926 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 CUEDC2Q9H467 287 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 MAGEC2Q9UBF1 373 aaPredicted RBP11.88□□□□□ -0.51
CUX1-221ENST00000622516 KIAA1024Q9UPX6 916 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 ADGRG1Q9Y653 693 aa11.88□□□□□ -0.51
CUX1-221ENST00000622516 POTEB3A0JP26 581 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 POTECB2RU33 542 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 CCDC175P0C221 793 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 CBX1P83916 185 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 CC2D2BQ6DHV5 1058 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 PPP4R3AQ6IN85 833 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 POTEBQ6S5H4 581 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 FCHSD1Q86WN1 690 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 MB21D1Q8N884 522 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 TBC1D5Q92609 795 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 PCMTD1Q96MG8 357 aaPredicted RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 SLF1Q9BQI6 1058 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 MRIQ9BWK5 157 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 ANO3Q9BYT9 981 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 TMEM39BQ9GZU3 492 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 AGPAT5Q9NUQ2 364 aa11.87□□□□□ -0.51
CUX1-221ENST00000622516 ATF5Q9Y2D1 282 aaPredicted RBP11.87□□□□□ -0.51
CUX1-221ENST00000622516 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.87□□□□□ -0.518e-7■■□□□ 12.7
CUX1-221ENST00000622516 SHTN1A0MZ66 631 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms