RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ZBTB7AO95365 584 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 STK4Q13043 487 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 PDIA5Q14554 519 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 IRF2BP1Q8IU81 584 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 SNX29Q8TEQ0 813 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 AMNQ9BXJ7 453 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 ANO3Q9BYT9 981 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 VPS16Q9H269 839 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 TAB2Q9NYJ8 693 aa23.87■■□□□ 1.41
LIME1-210ENST00000621325 LIMA1Q9UHB6 759 aaKnown RBP23.87■■□□□ 1.41
LIME1-210ENST00000621325 KCNJ18B7U540 433 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 FCER1AP12319 257 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 PDE4DQ08499 809 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 KCNJ12Q14500 433 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 TCP11X2Q5H9J9 407 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 KCNK18Q7Z418 384 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 SCAF8Q9UPN6 1271 aaKnown RBP23.86■■□□□ 1.41
LIME1-210ENST00000621325 ECM1Q16610 540 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 MIGA2Q7L4E1 593 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 NIM1KQ8IY84 436 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 CPLX3Q8WVH0 158 aa23.86■■□□□ 1.41
LIME1-210ENST00000621325 BAG1Q99933 345 aaPredicted RBP23.86■■□□□ 1.41
LIME1-210ENST00000621325 SHTN1A0MZ66 631 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 LRRC10BA6NIK2 292 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 CXCL9Q07325 125 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 FILIP1LQ4L180 1135 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 FBXO11Q86XK2 927 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 SLC16A10Q8TF71 515 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 EXOC1Q9NV70 894 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 MYMKA6NI61 221 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 RBL2Q08999 1139 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 MAPK8IP2Q13387 824 aaPredicted RBP23.85■■□□□ 1.41
LIME1-210ENST00000621325 CDK5RAP3Q96JB5 506 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 RAB34Q9BZG1 259 aa23.85■■□□□ 1.41
LIME1-210ENST00000621325 N4BP3O15049 544 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 MARCH6O60337 910 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 COPB1P53618 953 aaKnown RBP23.84■■□□□ 1.41
LIME1-210ENST00000621325 KRT79Q5XKE5 535 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 SV2BQ7L1I2 683 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 EEF2KMTQ96G04 330 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 CGNQ9P2M7 1197 aaKnown RBP23.84■■□□□ 1.41
LIME1-210ENST00000621325 GCFC2P16383 781 aaKnown RBP23.84■■□□□ 1.41
LIME1-210ENST00000621325 LARP4BQ92615 738 aaKnown RBP23.84■■□□□ 1.41
LIME1-210ENST00000621325 GLT8D2Q9H1C3 349 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 ZBTB21Q9ULJ3 1066 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 PRR12Q9ULL5 1215 aa23.84■■□□□ 1.41
LIME1-210ENST00000621325 H7C1D1 291 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 PSMA7O14818 248 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 OPLAHO14841 1288 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 AMPD3Q01432 767 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 NBPF9Q3BBW0 867 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 TTI2Q6NXR4 508 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 BTNL9Q6UXG8 535 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 DYMQ7RTS9 669 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 STK17AQ9UEE5 414 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 PCDHA12Q9UN75 941 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 PAXBP1Q9Y5B6 917 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 ARHGAP6O43182 974 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 STIM1Q13586 685 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 RAD54LQ92698 747 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 SRRTQ9BXP5 876 aaKnown RBP23.83■■□□□ 1.41
LIME1-210ENST00000621325 PIM2Q9P1W9 311 aa23.83■■□□□ 1.41
LIME1-210ENST00000621325 AKR1B15C9JRZ8 316 aaPredicted RBP23.82■■□□□ 1.4
LIME1-210ENST00000621325 SPAG1Q07617 926 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 TMEM119Q4V9L6 283 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 KIAA0895Q8NCT3 520 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 ZFP91Q96JP5 570 aaPredicted RBP23.82■■□□□ 1.4
LIME1-210ENST00000621325 TRIM47Q96LD4 638 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 DUSP9Q99956 384 aaKnown RBP23.82■■□□□ 1.4
LIME1-210ENST00000621325 SMCHD1A6NHR9 2005 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 HOXA13P31271 388 aaPredicted RBP23.82■■□□□ 1.4
LIME1-210ENST00000621325 FAM83BQ5T0W9 1011 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 AGBL3Q8NEM8 1001 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 CRYGNQ8WXF5 182 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 ARHGEF10LQ9HCE6 1279 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 TMX2Q9Y320 296 aa23.82■■□□□ 1.4
LIME1-210ENST00000621325 USP11P51784 963 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 ARHGAP4P98171 946 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 ZYXQ15942 572 aaKnown RBP23.81■■□□□ 1.4
LIME1-210ENST00000621325 CCDC84Q86UT8 332 aaPredicted RBP23.81■■□□□ 1.4
LIME1-210ENST00000621325 ZNF710Q8N1W2 664 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 SLC39A2Q9NP94 309 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 KCNMB3Q9NPA1 279 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 STX10O60499 249 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 GYPCP04921 128 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 SEMA3FQ13275 785 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 TOGARAM2Q6ZUX3 1019 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 PPFIBP1Q86W92 1011 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 REXO1L1PQ8IX06 675 aa23.81■■□□□ 1.4
LIME1-210ENST00000621325 CCDC47Q96A33 483 aaKnown RBP23.81■■□□□ 1.4
LIME1-210ENST00000621325 DHTKD1Q96HY7 919 aaPredicted RBP23.81■■□□□ 1.4
LIME1-210ENST00000621325 UTRNP46939 3433 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 WNT10BO00744 389 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 CASP14P31944 242 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 AP3B2Q13367 1082 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 ANKRD40Q6AI12 368 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 GLIS2Q9BZE0 524 aaPredicted RBP23.8■■□□□ 1.4
LIME1-210ENST00000621325 STAT3P40763 770 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 FXR1P51114 621 aaKnown RBP eCLIP23.8■■□□□ 1.4
LIME1-210ENST00000621325 STAT2P52630 851 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms