RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 TMEM240Q5SV17 173 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 MFSD5Q6N075 450 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 ENAHQ8N8S7 591 aaPredicted RBP13.44□□□□□ -0.26
CPNE3-210ENST00000621245 COPS5Q92905 334 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 VWCEQ96DN2 955 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 TRPV6Q9H1D0 765 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 VTA1Q9NP79 307 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 DIAPH3Q9NSV4 1193 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 COL20A1Q9P218 1284 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 TAF6LQ9Y6J9 622 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 ZNF213O14771 459 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 B4GALT4O60513 344 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 ARIH2O95376 493 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 KIAA1211Q6ZU35 1233 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 PNMA1Q8ND90 353 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 ESR2Q92731 530 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 WNT8AQ9H1J5 351 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 TRPC6Q9Y210 931 aa13.43□□□□□ -0.26
CPNE3-210ENST00000621245 MROH7Q68CQ1 1323 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 WDR19Q8NEZ3 1342 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 RBM47A0AV96 593 aaKnown RBP13.42□□□□□ -0.26
CPNE3-210ENST00000621245 EDNRBP24530 442 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 ITGA7Q13683 1181 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 RASIP1Q5U651 963 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 RNF207Q6ZRF8 634 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 CYB5R4Q7L1T6 521 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 TICAM2Q86XR7 235 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 DDX27Q96GQ7 796 aaKnown RBP13.42□□□□□ -0.26
CPNE3-210ENST00000621245 TTC14Q96N46 770 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 WDR11Q9BZH6 1224 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 AP5M1Q9H0R1 490 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 CXXC1Q9P0U4 656 aaPredicted RBP13.42□□□□□ -0.26
CPNE3-210ENST00000621245 ZSWIM5Q9P217 1185 aa13.42□□□□□ -0.26
CPNE3-210ENST00000621245 SUPT16HQ9Y5B9 1047 aaKnown RBP13.42□□□□□ -0.26
CPNE3-210ENST00000621245 TNKSO95271 1327 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 PCP11498 1178 aaKnown RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 DNAJB2P25686 324 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 CCL23P55773 120 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 AAMPQ13685 434 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 GRIN2CQ14957 1233 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 CDC37Q16543 378 aaPredicted RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 SLC35G1Q2M3R5 365 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 DUSP28Q4G0W2 176 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 IQSEC1Q6DN90 963 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 ZNF365Q70YC5 407 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 ADGRF4Q8IZF3 695 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 STAG2Q8N3U4 1231 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 ZSCAN10Q96SZ4 725 aaPredicted RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 DSCC1Q9BVC3 393 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 NOC4LQ9BVI4 516 aaKnown RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 RNF41Q9H4P4 317 aaPredicted RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 SENP2Q9HC62 589 aa13.41□□□□□ -0.26
CPNE3-210ENST00000621245 TRMT13Q9NUP7 481 aaKnown RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 ARIH1Q9Y4X5 557 aaPredicted RBP13.41□□□□□ -0.26
CPNE3-210ENST00000621245 OPLAHO14841 1288 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 PPP1R11O60927 126 aaPredicted RBP13.4□□□□□ -0.26
CPNE3-210ENST00000621245 MYL3P08590 195 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 CYP2C9P11712 490 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 MFAP1P55081 439 aaKnown RBP13.4□□□□□ -0.26
CPNE3-210ENST00000621245 PURAQ00577 322 aaKnown RBP13.4□□□□□ -0.26
CPNE3-210ENST00000621245 QRICH1Q2TAL8 776 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 TTC22Q5TAA0 569 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 DGKHQ86XP1 1220 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.4□□□□□ -0.26
CPNE3-210ENST00000621245 USP38Q8NB14 1042 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 OR6J1Q8NGC5 347 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 ANKS1AQ92625 1134 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 SCLYQ96I15 445 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 HIPK3Q9H422 1215 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 SLC24A3Q9HC58 644 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 ADD3Q9UEY8 706 aaKnown RBP13.4□□□□□ -0.26
CPNE3-210ENST00000621245 TTC28Q96AY4 2481 aa13.4□□□□□ -0.26
CPNE3-210ENST00000621245 TLR3O15455 904 aaKnown RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 PTH1RQ03431 593 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 PDE4DQ08499 809 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 PPIGQ13427 754 aaKnown RBP eCLIP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 COL9A3Q14050 684 aaPredicted RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 SEC23AQ15436 765 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 GPATCH4Q5T3I0 446 aaKnown RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 MAFAQ8NHW3 353 aaPredicted RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 SYTL5Q8TDW5 730 aaPredicted RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 TAAR1Q96RJ0 339 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 COL25A1Q9BXS0 654 aaPredicted RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 PBX4Q9BYU1 374 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 ALDH8A1Q9H2A2 487 aaPredicted RBP13.39□□□□□ -0.27
CPNE3-210ENST00000621245 KAT14Q9H8E8 782 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 JMJD4Q9H9V9 463 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 VAT1LQ9HCJ6 419 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 IL23AQ9NPF7 189 aa13.39□□□□□ -0.27
CPNE3-210ENST00000621245 COL4A4P53420 1690 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-210ENST00000621245 FOSL2P15408 326 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 CAMK2BQ13554 666 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 IMMTQ16891 758 aaKnown RBP13.38□□□□□ -0.27
CPNE3-210ENST00000621245 STOX1Q6ZVD7 989 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 IQCA1Q86XH1 822 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 TMEM199Q8N511 208 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 MS4A3Q96HJ5 214 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 YBX2Q9Y2T7 364 aaKnown RBP13.38□□□□□ -0.27
CPNE3-210ENST00000621245 Q9Y3F1 56 aa13.38□□□□□ -0.27
CPNE3-210ENST00000621245 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms