RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 PCDHA12Q9UN75 941 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 FANCGO15287 622 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 STAT3P40763 770 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 GNG11P61952 73 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 RAD9BQ6WBX8 426 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 TMEM179Q6ZVK1 233 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 GLIS3Q8NEA6 775 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 ACER1Q8TDN7 264 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 LARP4BQ92615 738 aaKnown RBP13.9□□□□□ -0.18
CIITA-212ENST00000618207 HAS1Q92839 578 aa13.9□□□□□ -0.18
CIITA-212ENST00000618207 hCG_1984214I3L0E3 225 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 STX10O60499 249 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 DPEP1P16444 411 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 ETF1P62495 437 aaKnown RBP13.89□□□□□ -0.19
CIITA-212ENST00000618207 ANKRD40Q6AI12 368 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 FCHSD1Q86WN1 690 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 ZNF713Q8N859 430 aaPredicted RBP13.89□□□□□ -0.19
CIITA-212ENST00000618207 GIMAP8Q8ND71 665 aaPredicted RBP13.89□□□□□ -0.19
CIITA-212ENST00000618207 POLD4Q9HCU8 107 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 TMOD2Q9NZR1 351 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 NYAP2Q9P242 653 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 SIPA1L1O43166 1804 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 MYO3BQ8WXR4 1341 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 B4DLN1 442 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 DLGAP5Q15398 846 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 QSER1Q2KHR3 1735 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 OGFOD1Q8N543 542 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 CCDC47Q96A33 483 aaKnown RBP13.89□□□□□ -0.19
CIITA-212ENST00000618207 P2RX7Q99572 595 aaKnown RBP13.89□□□□□ -0.19
CIITA-212ENST00000618207 TMEM39BQ9GZU3 492 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 ZHX3Q9H4I2 956 aa13.89□□□□□ -0.19
CIITA-212ENST00000618207 MAGEC2Q9UBF1 373 aaPredicted RBP13.89□□□□□ -0.19
CIITA-212ENST00000618207 ZSCAN12O43309 604 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 CTIFO43310 598 aaKnown RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 MFAP3LO75121 409 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 KCNB1Q14721 858 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 PRR16Q569H4 304 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 CT47A1Q5JQC4 288 aaPredicted RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 TATDN1Q6P1N9 297 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 SMAP1Q8IYB5 467 aaPredicted RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 KIAA0895Q8NCT3 520 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 PCMTD1Q96MG8 357 aaPredicted RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 WDR24Q96S15 920 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 ANO3Q9BYT9 981 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 MRPL44Q9H9J2 332 aaKnown RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 LIMA1Q9UHB6 759 aaKnown RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 SHTN1A0MZ66 631 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 E9PMD0 336 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 H7C1D1 291 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 KRT9P35527 623 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 PBX1P40424 430 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 CLK2P49760 499 aaKnown RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 KLK7P49862 253 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 UBXN2AP68543 259 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 HDLBPQ00341 1268 aaKnown RBP13.88□□□□□ -0.19
CIITA-212ENST00000618207 AMPD3Q01432 767 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 TRIM65Q6PJ69 517 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 ACRBPQ8NEB7 543 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 RAB34Q9BZG1 259 aa13.88□□□□□ -0.19
CIITA-212ENST00000618207 TPM1P09493 284 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 SPAG1Q07617 926 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 ELF2Q15723 593 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 KIAA1755Q5JYT7 1200 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 TTI2Q6NXR4 508 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 CCDC174Q6PII3 467 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 PDCL2Q8N4E4 241 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 DDX12PQ92771 950 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 KIAA1024Q9UPX6 916 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 NPHP3-ACAD11A0A0J9YXS1 232 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 POTEB3A0JP26 581 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 POTECB2RU33 542 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 BMP3P12645 472 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 MTIF2P46199 727 aaKnown RBP13.87□□□□□ -0.19
CIITA-212ENST00000618207 POTEBQ6S5H4 581 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 FBXO11Q86XK2 927 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 CYP2W1Q8TAV3 490 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 TBC1D5Q92609 795 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 P2RX5Q93086 422 aa13.87□□□□□ -0.19
CIITA-212ENST00000618207 DUSP9Q99956 384 aaKnown RBP13.87□□□□□ -0.19
CIITA-212ENST00000618207 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 KIF2AO00139 706 aaPredicted RBP13.86□□□□□ -0.19
CIITA-212ENST00000618207 MEIS1O00470 390 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 MEIS2O14770 477 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 ZBTB7AO95365 584 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 ABL1P00519 1130 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 FXR2P51116 673 aaKnown RBP eCLIP13.86□□□□□ -0.19
CIITA-212ENST00000618207 CCDC93Q567U6 631 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 PPP4R3BQ5MIZ7 849 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 RSBN1LQ6PCB5 846 aaPredicted RBP13.86□□□□□ -0.19
CIITA-212ENST00000618207 DCAF4Q8WV16 495 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 MKL1Q969V6 931 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 C7orf25Q9BPX7 421 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 MRIQ9BWK5 157 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 AMNQ9BXJ7 453 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 SPDYE4A6NLX3 237 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 SLU7O95391 586 aaKnown RBP13.86□□□□□ -0.19
CIITA-212ENST00000618207 CFBP00751 764 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 KCNJ6P48051 423 aa13.86□□□□□ -0.19
CIITA-212ENST00000618207 ERCC6LQ2NKX8 1250 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms