RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 DEF6Q9H4E7 631 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 CCDC151A5D8V7 595 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 EIF3JO75822 258 aaKnown RBP16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 GH2P01242 217 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 MTIF2P46199 727 aaKnown RBP16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 RCAN1P53805 252 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 CNKSR1Q969H4 720 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 PSTPIP2Q9H939 334 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 JMJD4Q9H9V9 463 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 EXOC1Q9NV70 894 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 KCNJ18B7U540 433 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 AKR1B15C9JRZ8 316 aaPredicted RBP16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 CHMP2AO43633 222 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 DNA2P51530 1060 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 CYP4A11Q02928 519 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 KCNJ12Q14500 433 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 DLGAP5Q15398 846 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 CCDC174Q6PII3 467 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 GLIS3Q8NEA6 775 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 GSDMAQ96QA5 445 aa16.13■□□□□ 0.17
SHROOM1-208ENST00000617339 NAALADL2Q58DX5 795 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 WDR78Q5VTH9 848 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 PDXDC2PQ6P474 469 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 CSGALNACT2Q8N6G5 542 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 TC2NQ8N9U0 490 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 KIFC2Q96AC6 838 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 HDAC9Q9UKV0 1011 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 BTAF1O14981 1849 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 KRT9P35527 623 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 MAGEA9P43362 315 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 TTLL12Q14166 644 aaPredicted RBP16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 SLFN13Q68D06 897 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 CALML4Q96GE6 196 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 CSRNP1Q96S65 589 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 MAGEC2Q9UBF1 373 aaPredicted RBP16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 NPHP3-ACAD11A0A0J9YXS1 232 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 B4DLN1 442 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 MYO1BO43795 1136 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 GTPBP6O43824 516 aaPredicted RBP16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 SHMT1P34896 483 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 R3HDM1Q15032 1099 aaKnown RBP16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 TMEM139Q8IV31 216 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 CPXCR1Q8N123 301 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 FAM204AQ9H8W3 233 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 ANKZF1Q9H8Y5 726 aa16.12■□□□□ 0.17
SHROOM1-208ENST00000617339 ERLIN1O75477 346 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 C4orf32Q8N8J7 132 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 LONP1P36776 959 aaKnown RBP16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 VSNL1P62760 191 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 BRD3Q15059 726 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 BEND6Q5SZJ8 279 aaPredicted RBP16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 HOXA10P31260 410 aaPredicted RBP16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 ARID5AQ03989 594 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 ICA1Q05084 483 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 PRR16Q569H4 304 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 LRRC31Q6UY01 552 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 KRT25Q7Z3Z0 450 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 SRGAP1Q7Z6B7 1085 aa16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 CCDC43Q96MW1 224 aaKnown RBP16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 BMP2KQ9NSY1 1161 aaPredicted RBP16.11■□□□□ 0.17
SHROOM1-208ENST00000617339 C4AP0C0L4 1744 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 FAM237AA0A1B0GTK4 181 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 PPP1R11O60927 126 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 ECE1P42892 770 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 NIM1KQ8IY84 436 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 SECISBP2LQ93073 1101 aaKnown RBP16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 HOMER2Q9NSB8 354 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 C4BP0C0L5 1744 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 DUOX1Q9NRD9 1551 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 CFBP00751 764 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 TBC1D10BQ4KMP7 808 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 CCDC47Q96A33 483 aaKnown RBP16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 CHP1Q99653 195 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 CRACR2AQ9BSW2 395 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 GUCA1BQ9UMX6 200 aa16.1■□□□□ 0.17
SHROOM1-208ENST00000617339 TRIM21P19474 475 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 STIM1Q13586 685 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 CASP8Q14790 479 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 POTEAQ6S8J7 498 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 RIN2Q8WYP3 895 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 TRIM10Q9UDY6 481 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 NRAPQ86VF7 1730 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 MAP2K7O14733 419 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 KIF5CO60282 957 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 ZNF18P17022 549 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 HMGB2P26583 209 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 LIG3P49916 1009 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 COPB1P53618 953 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 NR1I3Q14994 352 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 QRICH1Q2TAL8 776 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 RAD9BQ6WBX8 426 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 MAEAQ7L5Y9 396 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 KCNK18Q7Z418 384 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 CCDC155Q8N6L0 562 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 TTLL6Q8N841 843 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 ZMYND12Q9H0C1 365 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 FAM207AQ9NSI2 230 aaPredicted RBP16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 PSD3Q9NYI0 1048 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 E9PMD0 336 aa16.09■□□□□ 0.17
SHROOM1-208ENST00000617339 PSMA7O14818 248 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms