RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CCDC69A6NI79 296 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 PDIA3P30101 505 aaKnown RBP14.69□□□□□ -0.06
UPF1-208ENST00000600012 LIFRP42702 1097 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 CCT2P78371 535 aaKnown RBP14.69□□□□□ -0.06
UPF1-208ENST00000600012 TNFAIP2Q03169 654 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 FAM126BQ8IXS8 530 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 TMEM199Q8N511 208 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 GTF3C6Q969F1 213 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 AGBL1Q96MI9 1066 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 MYL10Q9BUA6 226 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 STX8Q9UNK0 236 aa14.69□□□□□ -0.06
UPF1-208ENST00000600012 LCTP09848 1927 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 CTAGE5O15320 804 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 PFKFB2O60825 505 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 CABYRO75952 493 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 ALAS1P13196 640 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 RXRAP19793 462 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 NT5C2P49902 561 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 EVCP57679 992 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 SCRN1Q12765 414 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 IFIT1BQ5T764 474 aaKnown RBP14.68□□□□□ -0.06
UPF1-208ENST00000600012 RCSD1Q6JBY9 416 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 APOA5Q6Q788 366 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 SGMS1Q86VZ5 419 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 MICU3Q86XE3 530 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 ZNF274Q96GC6 653 aaPredicted RBP14.68□□□□□ -0.06
UPF1-208ENST00000600012 TRERF1Q96PN7 1200 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 IL17RBQ9NRM6 502 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 CDH23Q9H251 3354 aa14.68□□□□□ -0.06
UPF1-208ENST00000600012 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.67□□□□□ -0.06
UPF1-208ENST00000600012 SOWAHBA6NEL2 793 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 CSF2RAP15509 400 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 BEX3Q00994 111 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 GRIN2CQ14957 1233 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 TMEM240Q5SV17 173 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 PSRC1Q6PGN9 363 aaPredicted RBP14.67□□□□□ -0.06
UPF1-208ENST00000600012 KCTD1Q719H9 257 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 TLK2Q86UE8 772 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 ZNF654Q8IZM8 581 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 TIFAQ96CG3 184 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 PPP1R12CQ9BZL4 782 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 ZNF576Q9H609 170 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 NCOA5Q9HCD5 579 aaKnown RBP14.67□□□□□ -0.06
UPF1-208ENST00000600012 PRR12Q9ULL5 1215 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 GNEQ9Y223 722 aaKnown RBP14.67□□□□□ -0.06
UPF1-208ENST00000600012 SLC12A7Q9Y666 1083 aa14.67□□□□□ -0.06
UPF1-208ENST00000600012 ASTN1O14525 1302 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 GOLGA8AA7E2F4 631 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 ZBTB43O43298 467 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 ZEB2O60315 1214 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 CD4P01730 458 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 FSCN1Q16658 493 aaKnown RBP14.66□□□□□ -0.06
UPF1-208ENST00000600012 RASIP1Q5U651 963 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 CXCL17Q6UXB2 119 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 C16orf59Q7L2K0 433 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 SLC43A3Q8NBI5 491 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 CHMP4CQ96CF2 233 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 INTS4Q96HW7 963 aaKnown RBP14.66□□□□□ -0.06
UPF1-208ENST00000600012 SEZ6LQ9BYH1 1024 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 AP5M1Q9H0R1 490 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 TCP11L1Q9NUJ3 509 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 CYP39A1Q9NYL5 469 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 CCPG1Q9ULG6 757 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 EYSQ5T1H1 3165 aa14.66□□□□□ -0.06
UPF1-208ENST00000600012 NID2Q14112 1375 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 TTC28Q96AY4 2481 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 NOVP48745 357 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 METAP2P50579 478 aaKnown RBP eCLIP14.65□□□□□ -0.06
UPF1-208ENST00000600012 CCDC178Q5BJE1 867 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 MUM1L1Q5H9M0 696 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 IQSEC1Q6DN90 963 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 SYNE3Q6ZMZ3 975 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 ZNF365Q70YC5 407 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 TMTC2Q8N394 836 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 DCAF4Q8WV16 495 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 MTIF3Q9H2K0 278 aaKnown RBP14.65□□□□□ -0.06
UPF1-208ENST00000600012 IL23AQ9NPF7 189 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 SMC3Q9UQE7 1217 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 Q9Y3F1 56 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.65□□□□□ -0.06
UPF1-208ENST00000600012 GBF1Q92538 1859 aa14.65□□□□□ -0.06
UPF1-208ENST00000600012 PRUNE2Q8WUY3 3088 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 DYNC1LI2O43237 492 aaPredicted RBP14.64□□□□□ -0.07
UPF1-208ENST00000600012 JAK2O60674 1132 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 ICAM1P05362 532 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 ACRP10323 421 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 SMPD1P17405 629 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 CDC27P30260 824 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 CYP2C18P33260 490 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 SNAP25P60880 206 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 ITGA7Q13683 1181 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 CCDC96Q2M329 555 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 NSMFQ6X4W1 530 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 RASGRP2Q7LDG7 609 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 CATIPQ7Z7H3 387 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 DGKHQ86XP1 1220 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 FBXO16Q8IX29 292 aaPredicted RBP14.64□□□□□ -0.07
UPF1-208ENST00000600012 MORC4Q8TE76 937 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 ANKS1AQ92625 1134 aa14.64□□□□□ -0.07
UPF1-208ENST00000600012 SYMPKQ92797 1274 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms