RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 LIFRP42702 1097 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 EPHB4P54760 987 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 PDE4DQ08499 809 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 NOL8Q76FK4 1167 aaKnown RBP14.11□□□□□ -0.15
LIG1-217ENST00000599165 SGMS1Q86VZ5 419 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 MCF2L2Q86YR7 1114 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 FAM126BQ8IXS8 530 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 CMTR1Q8N1G2 835 aaKnown RBP14.11□□□□□ -0.15
LIG1-217ENST00000599165 SRBD1Q8N5C6 995 aaKnown RBP14.11□□□□□ -0.15
LIG1-217ENST00000599165 IL31RAQ8NI17 732 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 BADQ92934 168 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 GLT1D1Q96MS3 346 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 RMDN3Q96TC7 470 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 SPZ1Q9BXG8 430 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 PRDM5Q9NQX1 630 aaPredicted RBP14.11□□□□□ -0.15
LIG1-217ENST00000599165 PXMP2Q9NR77 195 aa14.11□□□□□ -0.15
LIG1-217ENST00000599165 ARVCFO00192 962 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 CFBP00751 764 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 CD4P01730 458 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 EIF2AK2P19525 551 aaKnown RBP14.1□□□□□ -0.15
LIG1-217ENST00000599165 HOXA13P31271 388 aaPredicted RBP14.1□□□□□ -0.15
LIG1-217ENST00000599165 PSMC6P62333 389 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 LRIT3Q3SXY7 679 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 CASC1Q6TDU7 716 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 NSUN6Q8TEA1 469 aaKnown RBP14.1□□□□□ -0.15
LIG1-217ENST00000599165 SPC25Q9HBM1 224 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 BRPF3Q9ULD4 1205 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 DOCK5Q9H7D0 1870 aa14.1□□□□□ -0.15
LIG1-217ENST00000599165 A0A0U1RQG5 324 aaPredicted RBP14.09□□□□□ -0.15
LIG1-217ENST00000599165 SMARCA1P28370 1054 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 PURAQ00577 322 aaKnown RBP14.09□□□□□ -0.15
LIG1-217ENST00000599165 C9orf50Q5SZB4 431 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 SCFD2Q8WU76 684 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 PIBF1Q8WXW3 757 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 NEK1Q96PY6 1258 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 IWS1Q96ST2 819 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 PDCD2LQ9BRP1 358 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 AP5M1Q9H0R1 490 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 FRMPD4Q14CM0 1322 aa14.09□□□□□ -0.15
LIG1-217ENST00000599165 LAMA2P24043 3122 aaKnown RBP14.08□□□□□ -0.16
LIG1-217ENST00000599165 A6NJR5 290 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 NR3C2P08235 984 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 TXNP10599 105 aaKnown RBP14.08□□□□□ -0.16
LIG1-217ENST00000599165 CPA1P15085 419 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 HSPA4P34932 840 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 ARHGAP1Q07960 439 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 FUT2Q10981 343 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 PPP2R5BQ15173 497 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 SHHQ15465 462 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 APOA5Q6Q788 366 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 TMTC3Q6ZXV5 915 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 TMTC2Q8N394 836 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 OR6J1Q8NGC5 347 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 CTCFLQ8NI51 663 aaPredicted RBP14.08□□□□□ -0.16
LIG1-217ENST00000599165 MAP3K20Q9NYL2 800 aaKnown RBP14.08□□□□□ -0.16
LIG1-217ENST00000599165 PRKAG2Q9UGJ0 569 aa14.08□□□□□ -0.16
LIG1-217ENST00000599165 hCG_1642624A0A1W2PR95 340 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 CCDC69A6NI79 296 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 NKRFO15226 690 aaKnown RBP eCLIP14.07□□□□□ -0.16
LIG1-217ENST00000599165 CABYRO75952 493 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 ITGA7Q13683 1181 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 PGM5Q15124 567 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 LY6KQ17RY6 165 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 RNF20Q5VTR2 975 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 ARHGEF16Q5VV41 709 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 NFXL1Q6ZNB6 911 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 SEPT14Q6ZU15 432 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 DHX32Q7L7V1 743 aaKnown RBP14.07□□□□□ -0.16
LIG1-217ENST00000599165 FANCBQ8NB91 859 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 PPP1R13LQ8WUF5 828 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 ZFP91Q96JP5 570 aaPredicted RBP14.07□□□□□ -0.16
LIG1-217ENST00000599165 LBHD1Q9BQE6 289 aaPredicted RBP14.07□□□□□ -0.16
LIG1-217ENST00000599165 FAM217BQ9NTX9 383 aaPredicted RBP14.07□□□□□ -0.16
LIG1-217ENST00000599165 TMEM39AQ9NV64 488 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 DDX41Q9UJV9 622 aaKnown RBP14.07□□□□□ -0.16
LIG1-217ENST00000599165 SNX14Q9Y5W7 946 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 UMODL1Q5DID0 1318 aa14.07□□□□□ -0.16
LIG1-217ENST00000599165 DCDC2CA8MYV0 355 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 GCOM1H8Y6P7 765 aaPredicted RBP14.06□□□□□ -0.16
LIG1-217ENST00000599165 MEIS2O14770 477 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 B4GALT4O60513 344 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 POLR2MP0CAP2 368 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 KIF5BP33176 963 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 TTLL4Q14679 1199 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 STXBP2Q15833 593 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 C16orf59Q7L2K0 433 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 VSIG10LQ86VR7 867 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 MICU3Q86XE3 530 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 SAMD3Q8N6K7 520 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 GPKOWQ92917 476 aaPredicted RBP eCLIP14.06□□□□□ -0.16
LIG1-217ENST00000599165 VWCEQ96DN2 955 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 MPHOSPH6Q99547 160 aaKnown RBP14.06□□□□□ -0.16
LIG1-217ENST00000599165 TRPV6Q9H1D0 765 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 SLC12A7Q9Y666 1083 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 SCN5AQ14524 2016 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 CNTNAP5Q8WYK1 1306 aa14.06□□□□□ -0.16
LIG1-217ENST00000599165 EIF3JO75822 258 aaKnown RBP14.05□□□□□ -0.16
LIG1-217ENST00000599165 TIMP1P01033 207 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 MMP3P08254 477 aa14.05□□□□□ -0.16
LIG1-217ENST00000599165 MYL3P08590 195 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms