RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ANO1Q5XXA6 986 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 CMTR1Q8N1G2 835 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 CCDC82Q8N4S0 544 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 WASF1Q92558 559 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 DDX11Q96FC9 970 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 C12orf42Q96LP6 360 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 SPZ1Q9BXG8 430 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 TANGO6Q9C0B7 1094 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 CWC22Q9HCG8 908 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 CD320Q9NPF0 282 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 SEC63Q9UGP8 760 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 SLC15A5A6NIM6 579 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 TMEM232C9JQI7 657 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 JAK2O60674 1132 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 CTDNEP1O95476 244 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 PTPREP23469 700 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 SMARCA1P28370 1054 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 FAAP100Q0VG06 881 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 NTRK3Q16288 839 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 FAM160B2Q86V87 743 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 SRBD1Q8N5C6 995 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 SMARCC2Q8TAQ2 1214 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 CHURC1Q8WUH1 139 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 PHKBQ93100 1093 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 RRP36Q96EU6 259 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 FBXL18Q96ME1 805 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 RNF26Q9BY78 433 aaPredicted RBP13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 RPAP3Q9H6T3 665 aaPredicted RBP13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 EMILIN3Q9NT22 766 aa13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 ORC3Q9UBD5 711 aaPredicted RBP13.9□□□□□ -0.18
SHKBP1-213ENST00000597325 SEPT4O43236 478 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 PPFIA3O75145 1194 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 CNMDO75829 334 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 DEXIO95424 95 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 PDCP20941 246 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 GRB14Q14449 540 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 KIAA1755Q5JYT7 1200 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 SYDE2Q5VT97 1194 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 CCAR1Q8IX12 1150 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 GTF3C2Q8WUA4 911 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 PAGR1Q9BTK6 254 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 KCNH6Q9H252 994 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 NKX2-4Q9H2Z4 354 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 TMEM39AQ9NV64 488 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 FEM1BQ9UK73 627 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 PHF24Q9UPV7 400 aa13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 YBX2Q9Y2T7 364 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-213ENST00000597325 ZFHX4Q86UP3 3567 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 ZDBF2Q9HCK1 2354 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 PRPF3O43395 683 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 FLOT1O75955 427 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 TIMP1P01033 207 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 POU3F3P20264 500 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 SLC16A2P36021 539 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 FUT2Q10981 343 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 TRIM29Q14134 588 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 RAB30Q15771 203 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 TTBK2Q6IQ55 1244 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 MFSD5Q6N075 450 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 SAMD1Q6SPF0 538 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 ANKRD33Q7Z3H0 272 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 HOMER1Q86YM7 354 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 MICALL1Q8N3F8 863 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 PIBF1Q8WXW3 757 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 TOX2Q96NM4 488 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 SLF1Q9BQI6 1058 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 UBA5Q9GZZ9 404 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 CPVLQ9H3G5 476 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 MSRAQ9UJ68 235 aa13.88□□□□□ -0.19
SHKBP1-213ENST00000597325 ZNF318Q5VUA4 2279 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L15C9J2P7 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L13C9JLJ4 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L11C9JVI0 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L18D6R9N7 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L22D6RA61 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L17D6RBQ6 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L19D6RCP7 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L20D6RJB6 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 PLA2G6O60733 806 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 PQBP1O60828 265 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 XBP1P17861 261 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 USP17L24Q0WX57 530 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 BTNL9Q6UXG8 535 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 ADGRF4Q8IZF3 695 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 KIFC2Q96AC6 838 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 ALG1Q9BT22 464 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 RIOX1Q9H6W3 641 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 SLC28A3Q9HAS3 691 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 VAT1LQ9HCJ6 419 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 TBX21Q9UL17 535 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 COG5Q9UP83 839 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 CTDP1Q9Y5B0 961 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 V9GY48 417 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 SPTBN4Q9H254 2564 aa13.87□□□□□ -0.19
SHKBP1-213ENST00000597325 MYH6P13533 1939 aa13.86□□□□□ -0.19
SHKBP1-213ENST00000597325 DTNBO60941 627 aa13.86□□□□□ -0.19
SHKBP1-213ENST00000597325 SCG2P13521 617 aa13.86□□□□□ -0.19
SHKBP1-213ENST00000597325 FOSBP53539 338 aa13.86□□□□□ -0.19
SHKBP1-213ENST00000597325 FOXK2Q01167 660 aa13.86□□□□□ -0.19
SHKBP1-213ENST00000597325 CDC37Q16543 378 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms