RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 FAM109BQ6ICB4 259 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 CATIPQ7Z7H3 387 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 FAM126BQ8IXS8 530 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 MB21D2Q8IYB1 491 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 IL31RAQ8NI17 732 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 MORC4Q8TE76 937 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 SCLYQ96I15 445 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 RMDN3Q96TC7 470 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 AMNQ9BXJ7 453 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 TRMT13Q9NUP7 481 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 MRPL11Q9Y3B7 192 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 PCDHA1Q9Y5I3 950 aa11.98□□□□□ -0.49
SHKBP1-210ENST00000595874 ELP1O95163 1332 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 BAZ2BQ9UIF8 2168 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 PALM3A6NDB9 673 aaPredicted RBP11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 CYTH3O43739 400 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 PLEKHA8P1O95397 391 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 TIMP1P01033 207 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 SART3Q15020 963 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 CASC1Q6TDU7 716 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 CENPQQ7L2Z9 268 aaPredicted RBP11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 ANKRD33Q7Z3H0 272 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 GPKOWQ92917 476 aaPredicted RBP eCLIP11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 LY9Q9HBG7 655 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 TBX21Q9UL17 535 aa11.97□□□□□ -0.49
SHKBP1-210ENST00000595874 CCDC69A6NI79 296 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 ZBTB5O15062 677 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 CPA1P15085 419 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 MCF2L2Q86YR7 1114 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 ZNF654Q8IZM8 581 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 DNERQ8NFT8 737 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 IGDCC4Q8TDY8 1250 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 AFG1LQ8WV93 481 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 CCDC136Q96JN2 1154 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 MPHOSPH6Q99547 160 aaKnown RBP11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 ALG1Q9BT22 464 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 HIPK3Q9H422 1215 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 PXMP2Q9NR77 195 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 MTMR10Q9NXD2 777 aa11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 NAP1L2Q9ULW6 460 aaPredicted RBP11.96□□□□□ -0.49
SHKBP1-210ENST00000595874 MROH7Q68CQ1 1323 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 RBM47A0AV96 593 aaKnown RBP11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 SH2B2O14492 632 aaPredicted RBP11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 CD4P01730 458 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 NR3C2P08235 984 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 EDNRBP24530 442 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 PURAQ00577 322 aaKnown RBP11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 TTLL4Q14679 1199 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 STXBP2Q15833 593 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 NBPF20Q3BBV1 942 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 ZNF697Q5TEC3 545 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 ZNF365Q70YC5 407 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 C16orf59Q7L2K0 433 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 DEFB128Q7Z7B8 93 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 CTCFLQ8NI51 663 aaPredicted RBP11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 NSUN6Q8TEA1 469 aaKnown RBP11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 SCFD2Q8WU76 684 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 TOX2Q96NM4 488 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 MTG1Q9BT17 334 aaPredicted RBP11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 BCAS3Q9H6U6 928 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 RTEL1Q9NZ71 1219 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 MRVI1Q9Y6F6 885 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 MYH7BA7E2Y1 1941 aa11.95□□□□□ -0.5
SHKBP1-210ENST00000595874 B4DLN1 442 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 ZNF286BP0CG31 522 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 PBX2P40425 430 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 CPT1AP50416 773 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 MRPL12P52815 198 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 SP4Q02446 784 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 TROAPQ12815 778 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 ADCK5Q3MIX3 580 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 TMEM240Q5SV17 173 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 MFSD5Q6N075 450 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 OTOP2Q7RTS6 562 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 MICU3Q86XE3 530 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 TMEM199Q8N511 208 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 SRBD1Q8N5C6 995 aaKnown RBP11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 MYLIPQ8WY64 445 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 MTMR8Q96EF0 704 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 GUCD1Q96NT3 240 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 WNT8AQ9H1J5 351 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 ALDH8A1Q9H2A2 487 aaPredicted RBP11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 RIOX1Q9H6W3 641 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 POLR3EQ9NVU0 708 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 PNMA2Q9UL42 364 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 SCN5AQ14524 2016 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 KIAA1217Q5T5P2 1943 aa11.94□□□□□ -0.5
SHKBP1-210ENST00000595874 DOCK5Q9H7D0 1870 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 PNMA6FA0A0J9YX94 578 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 ZBBXA8MT70 800 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 GCOM1H8Y6P7 765 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 CDC45O75419 566 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 CABYRO75952 493 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 GH1P01241 217 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 MMP3P08254 477 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 POLR2MP0CAP2 368 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 MCM5P33992 734 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 HSD17B4P51659 736 aa11.93□□□□□ -0.5
SHKBP1-210ENST00000595874 NKX3-2P78367 333 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms