RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 TSPY2A6NKD2 308 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 PLA2G6O60733 806 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 ITGB8P26012 769 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 TNFAIP2Q03169 654 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 CTDSPL2Q05D32 466 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 TSHZ3Q63HK5 1081 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 CCDC144CPQ8IYA2 1237 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 LRRC47Q8N1G4 583 aaKnown RBP11.15□□□□□ -0.62
BRCA1-226ENST00000591534 LENG1Q96BZ8 264 aaPredicted RBP11.15□□□□□ -0.62
BRCA1-226ENST00000591534 TIFAQ96CG3 184 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 TTYH1Q9H313 450 aaPredicted RBP11.15□□□□□ -0.62
BRCA1-226ENST00000591534 HOMER2Q9NSB8 354 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 TBX21Q9UL17 535 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 PNMA2Q9UL42 364 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 STX8Q9UNK0 236 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 RLFQ13129 1914 aa11.15□□□□□ -0.62
BRCA1-226ENST00000591534 PLIN4Q96Q06 1357 aa11.15□□□□□ -0.63
BRCA1-226ENST00000591534 BAZ2AQ9UIF9 1905 aaKnown RBP11.14□□□□□ -0.63
BRCA1-226ENST00000591534 CDK7P50613 346 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 NKX3-2P78367 333 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 PPARAQ07869 468 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 IQSEC1Q6DN90 963 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 TSC1Q92574 1164 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 TRERF1Q96PN7 1200 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 GAS2L1Q99501 681 aaPredicted RBP11.14□□□□□ -0.63
BRCA1-226ENST00000591534 MPHOSPH6Q99547 160 aaKnown RBP11.14□□□□□ -0.63
BRCA1-226ENST00000591534 ZNF576Q9H609 170 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 GDPD2Q9HCC8 539 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 EPB41L4AQ9HCS5 686 aaPredicted RBP11.14□□□□□ -0.63
BRCA1-226ENST00000591534 RNF146Q9NTX7 359 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 MSRAQ9UJ68 235 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 CUL9Q8IWT3 2517 aa11.14□□□□□ -0.63
BRCA1-226ENST00000591534 M0R2C6 588 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 ALAS1P13196 640 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 MCCP23508 829 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 EPHB4P54760 987 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 RAB30Q15771 203 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 RCSD1Q6JBY9 416 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 FAM133AQ8N9E0 248 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 OTUD7AQ8TE49 926 aaPredicted RBP11.13□□□□□ -0.63
BRCA1-226ENST00000591534 RNF166Q96A37 237 aaPredicted RBP11.13□□□□□ -0.63
BRCA1-226ENST00000591534 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.13□□□□□ -0.636e-6■■□□□ 12.9
BRCA1-226ENST00000591534 ADD3Q9UEY8 706 aaKnown RBP11.13□□□□□ -0.63
BRCA1-226ENST00000591534 Q9Y3F1 56 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 MYH8P13535 1937 aa11.13□□□□□ -0.63
BRCA1-226ENST00000591534 LTBP2Q14767 1821 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 LOC102724159A0A0B4J2E5 919 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 MYADML2A6NDP7 307 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 GOLGA8CPA6NN73 597 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 B4DLN1 442 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 MRPL12P52815 198 aaKnown RBP11.12□□□□□ -0.63
BRCA1-226ENST00000591534 CNTN2Q02246 1040 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 PWP2Q15269 919 aaKnown RBP11.12□□□□□ -0.63
BRCA1-226ENST00000591534 FSCN1Q16658 493 aaKnown RBP11.12□□□□□ -0.63
BRCA1-226ENST00000591534 KMT5BQ4FZB7 885 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 BRDTQ58F21 947 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-226ENST00000591534 ZMYM1Q5SVZ6 1142 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 TLK2Q86UE8 772 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 TICAM2Q86XR7 235 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 FAM126BQ8IXS8 530 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 RPUSD2Q8IZ73 545 aaKnown RBP11.12□□□□□ -0.63
BRCA1-226ENST00000591534 AGBL1Q96MI9 1066 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 VTA1Q9NP79 307 aa11.12□□□□□ -0.63
BRCA1-226ENST00000591534 A1CFQ9NQ94 594 aaKnown RBP11.12□□□□□ -0.63
BRCA1-226ENST00000591534 CFAP99D6REC4 459 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 DYNC1LI2O43237 492 aaPredicted RBP11.11□□□□□ -0.63
BRCA1-226ENST00000591534 RANBP6O60518 1105 aaKnown RBP11.11□□□□□ -0.63
BRCA1-226ENST00000591534 FGBP02675 491 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 SUPT20HL2P0C7V6 817 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 CSF2RAP15509 400 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 MX1P20591 662 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 ITGA7Q13683 1181 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 GRIN2CQ14957 1233 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 TJAP1Q5JTD0 557 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 TMEM240Q5SV17 173 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 HOMEZQ8IX15 550 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 DCAF4Q8WV16 495 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 PPP1R12CQ9BZL4 782 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 HIPK3Q9H422 1215 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 IL23AQ9NPF7 189 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 CCPG1Q9ULG6 757 aa11.11□□□□□ -0.63
BRCA1-226ENST00000591534 RAD50Q92878 1312 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 CD4P01730 458 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 ICAM1P05362 532 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 CPT1AP50416 773 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 CCDC96Q2M329 555 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 AKNAD1Q5T1N1 836 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 CXCL17Q6UXB2 119 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 NSMFQ6X4W1 530 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 KIAA1211Q6ZU35 1233 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 ZNF365Q70YC5 407 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 KCTD1Q719H9 257 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 SLC43A3Q8NBI5 491 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 PI4K2BQ8TCG2 481 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 HERVK_113Q902F9 699 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 EVI5LQ96CN4 794 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 CCDC136Q96JN2 1154 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 FGD4Q96M96 766 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 KATNBL1Q9H079 304 aa11.1□□□□□ -0.63
BRCA1-226ENST00000591534 SLC28A3Q9HAS3 691 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms