RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ARHGAP8P85298 464 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 RBM10P98175 930 aaKnown RBP4.9□□□□□ -1.63
LIG3-211ENST00000588713 EXOSC9Q06265 439 aaKnown RBP4.9□□□□□ -1.63
LIG3-211ENST00000588713 PICALMQ13492 652 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 DIXDC1Q155Q3 683 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 NFE2L2Q16236 605 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 KRT24Q2M2I5 525 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 UVSSAQ2YD98 709 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 HDGFL1Q5TGJ6 251 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 MCTP1Q6DN14 999 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 HHIPL2Q6UWX4 724 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 UNQ6494/PRO21346Q6UXR6 183 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 LIAT1Q6ZQX7 453 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 SH3BP5LQ7L8J4 393 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 ADAM32Q8TC27 787 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 TBC1D22AQ8WUA7 517 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 PIBF1Q8WXW3 757 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 EMID1Q96A84 441 aaPredicted RBP4.9□□□□□ -1.63
LIG3-211ENST00000588713 PLEKHF1Q96S99 279 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 LNPKQ9C0E8 428 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 SLC5A4Q9NY91 659 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 CACNA1FO60840 1977 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 DOCK2Q92608 1830 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 WDR87Q6ZQQ6 2873 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 FRYQ5TBA9 3013 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 SRRM3A6NNA2 597 aaPredicted RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 LINC01565O15544 149 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 B4GALT4O60513 344 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 ADH1BP00325 375 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 TPM3P06753 285 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 ZSCAN20P17040 1043 aaPredicted RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 PMLP29590 882 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 TMPOP42166 694 aaKnown RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 BACE1P56817 501 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 DEFB103AP81534 67 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 FKBP5Q13451 457 aaPredicted RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 GPM6BQ13491 265 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 CBX2Q14781 532 aaPredicted RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 COL19A1Q14993 1142 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 TTC22Q5TAA0 569 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 LARP1BQ659C4 914 aaKnown RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 CCSAPQ6IQ19 270 aaPredicted RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 ZC3H14Q6PJT7 736 aaKnown RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 CASC1Q6TDU7 716 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 CCDC105Q8IYK2 499 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 PCSK9Q8NBP7 692 aaKnown RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 KREMEN2Q8NCW0 462 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 SHCBP1Q8NEM2 672 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 KLHDC9Q8NEP7 349 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 MAML3Q96JK9 1138 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 AGBL1Q96MI9 1066 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 SMOC2Q9H3U7 446 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 TSPY26PQ9H489 355 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 SPTLC3Q9NUV7 552 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 BTBD7Q9P203 1132 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 ZHX1Q9UKY1 873 aaPredicted RBP4.89□□□□□ -1.63
LIG3-211ENST00000588713 CHMP3Q9Y3E7 222 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 FRYLO94915 3013 aa4.89□□□□□ -1.63
LIG3-211ENST00000588713 ANKRD18BA2A2Z9 1011 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 FAM187AA6NFU0 413 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 NCK2O43639 380 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PI15O43692 258 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 REC8O95072 547 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 OATP04181 439 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PTMAP06454 111 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 ZNF865P0CJ78 1059 aaPredicted RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 CYP2C9P11712 490 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 GSPT1P15170 499 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 CLCN5P51795 746 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 WDR5P61964 334 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 PRR20EP86478 221 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PRR20CP86479 221 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PRR20DP86480 221 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PRR20BP86481 221 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PRR20AP86496 221 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 HYAL1Q12794 435 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 MTMR3Q13615 1198 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 RRP1BQ14684 758 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 SYCP1Q15431 976 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 NEUROD2Q15784 382 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 ZYXQ15942 572 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 CTC1Q2NKJ3 1217 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 GNASQ5JWF2 1037 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 CWF19L1Q69YN2 538 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 UBE3BQ7Z3V4 1068 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 SCUBE3Q8IX30 993 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 DTWD2Q8NBA8 298 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 TMEM87AQ8NBN3 555 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 GPT2Q8TD30 523 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 TSR2Q969E8 191 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 IL17RAQ96F46 866 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 FAM84BQ96KN1 310 aaPredicted RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 RAD9AQ99638 391 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 PHF7Q9BWX1 381 aaPredicted RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 SLC6A16Q9GZN6 736 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 OSBPL5Q9H0X9 879 aaPredicted RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 DIAPH3Q9NSV4 1193 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 TMEM63CQ9P1W3 806 aa4.88□□□□□ -1.63
LIG3-211ENST00000588713 NOB1Q9ULX3 412 aaKnown RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 CNPY2Q9Y2B0 182 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms