RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 GULP1Q9UBP9 304 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 PRKAG3Q9UGI9 489 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 NUDT5Q9UKK9 219 aa6.81□□□□□ -1.32
VMP1-205ENST00000587470 C7orf72A4D263 438 aa6.8□□□□□ -1.32
VMP1-205ENST00000587470 SASH1O94885 1247 aa6.8□□□□□ -1.32
VMP1-205ENST00000587470 CAP1Q01518 475 aa6.8□□□□□ -1.32
VMP1-205ENST00000587470 FAM178BQ8IXR5 827 aa6.8□□□□□ -1.32
VMP1-205ENST00000587470 PEX11GQ96HA9 241 aa6.8□□□□□ -1.32
VMP1-205ENST00000587470 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.8□□□□□ -1.323e-25■□□□□ 8.3
VMP1-205ENST00000587470 NKX2-4Q9H2Z4 354 aa6.8□□□□□ -1.32
VMP1-205ENST00000587470 ZBTB7AO95365 584 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 PLS3P13797 630 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 ETFBP38117 255 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 LIMS1P48059 325 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 FOXO4P98177 505 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 ARID5AQ03989 594 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 SLC9A5Q14940 896 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 FXNQ16595 210 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 LARP1BQ659C4 914 aaKnown RBP6.79□□□□□ -1.32
VMP1-205ENST00000587470 LINC01356Q8N9X3 169 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 ALG3Q92685 438 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 TSPAN17Q96FV3 270 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 FBLN5Q9UBX5 448 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 FAN1Q9Y2M0 1017 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 KIF21AQ7Z4S6 1674 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 ATAD2BQ9ULI0 1458 aa6.79□□□□□ -1.32
VMP1-205ENST00000587470 ARHGEF11O15085 1522 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 DDAH1O94760 285 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 THBDP07204 575 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 ASGR2P07307 311 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 ATF2P15336 505 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 HOXC12P31275 282 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 KRTAP10-2P60368 255 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 VMACQ2NL98 169 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 SV2CQ496J9 727 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 RXFP1Q9HBX9 757 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 LRP2BPQ9P2M1 347 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 PLA2G2DQ9UNK4 145 aa6.78□□□□□ -1.32
VMP1-205ENST00000587470 HMGXB3Q12766 1538 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 FUCA1P04066 466 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 WWC2Q6AWC2 1192 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 IQCEQ6IPM2 695 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 PLEKHO2Q8TD55 490 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 FRS2Q8WU20 508 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 ZNF428Q96B54 188 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 CCDC140Q96MF4 163 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 LGR4Q9BXB1 951 aa6.77□□□□□ -1.33
VMP1-205ENST00000587470 SUSD5O60279 629 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 NTRK1P04629 796 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 ITGAVP06756 1048 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 FGRP09769 529 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 MBLAC2Q68D91 279 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 B3GNT8Q7Z7M8 397 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 SP8Q8IXZ3 490 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 NPLOC4Q8TAT6 608 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 CPA5Q8WXQ8 436 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 DPF3Q92784 378 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 TINF2Q9BSI4 451 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 XYLT2Q9H1B5 865 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 ZNF408Q9H9D4 720 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 LUC7LQ9NQ29 371 aaKnown RBP6.76□□□□□ -1.33
VMP1-205ENST00000587470 MRC2Q9UBG0 1479 aa6.76□□□□□ -1.33
VMP1-205ENST00000587470 PMLP29590 882 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 CYP4F3Q08477 520 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 INF2Q27J81 1249 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 E4F1Q66K89 784 aaPredicted RBP6.75□□□□□ -1.33
VMP1-205ENST00000587470 ZNF227Q86WZ6 799 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 TP53I13Q8NBR0 393 aaPredicted RBP6.75□□□□□ -1.33
VMP1-205ENST00000587470 FNIP1Q8TF40 1166 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 BTN2A2Q8WVV5 523 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 RELTQ969Z4 430 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 BCAS3Q9H6U6 928 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 MARCH2Q9P0N8 246 aa6.75□□□□□ -1.33
VMP1-205ENST00000587470 OTOL1A6NHN0 477 aaPredicted RBP6.74□□□□□ -1.33
VMP1-205ENST00000587470 B2RBV5 119 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 FFAR3O14843 346 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 CPP00450 1065 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 SCG5P05408 212 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 MCF2L2Q86YR7 1114 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 DCP2Q8IU60 420 aaKnown RBP6.74□□□□□ -1.33
VMP1-205ENST00000587470 SLC43A3Q8NBI5 491 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 MICAL1Q8TDZ2 1067 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 JAG2Q9Y219 1238 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 TIMM13Q9Y5L4 95 aaPredicted RBP6.74□□□□□ -1.33
VMP1-205ENST00000587470 PMF1-BGLAPU3KQ54 211 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 WDR62O43379 1518 aa6.74□□□□□ -1.33
VMP1-205ENST00000587470 C22orf46C9J442 243 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 TBX1O43435 398 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 PLA2G1BP04054 148 aaKnown RBP6.73□□□□□ -1.33
VMP1-205ENST00000587470 SNRPB2P08579 225 aaKnown RBP6.73□□□□□ -1.33
VMP1-205ENST00000587470 DNAJA1P31689 397 aaKnown RBP6.73□□□□□ -1.33
VMP1-205ENST00000587470 MC3RP41968 323 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 ECI1P42126 302 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 RBM25P49756 843 aaKnown RBP6.73□□□□□ -1.33
VMP1-205ENST00000587470 GTF2A2P52657 109 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 HTRA3P83110 453 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 CACNB2Q08289 660 aaPredicted RBP6.73□□□□□ -1.33
VMP1-205ENST00000587470 VWA3BQ502W6 1294 aa6.73□□□□□ -1.33
VMP1-205ENST00000587470 MRM1Q6IN84 353 aaKnown RBP6.73□□□□□ -1.33
VMP1-205ENST00000587470 EEPD1Q7L9B9 569 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms