RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TXLNAP40222 546 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 PSMC4P43686 418 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 JAG1P78504 1218 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 IKQ13123 557 aaPredicted RBP11.78□□□□□ -0.52
LIG3-203ENST00000585370 CDC37Q16543 378 aaPredicted RBP11.78□□□□□ -0.52
LIG3-203ENST00000585370 INF2Q27J81 1249 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 QRICH1Q2TAL8 776 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 DTHD1Q6ZMT9 781 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 RASGRP2Q7LDG7 609 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 FBXO11Q86XK2 927 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 LPAR1Q92633 364 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 COA7Q96BR5 231 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 TRIM47Q96LD4 638 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 AK8Q96MA6 479 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 CSRNP2Q9H175 543 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 FEM1BQ9UK73 627 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 PCDHA1Q9Y5I3 950 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 ZHX2Q9Y6X8 837 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 FDX1P10109 184 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 CYP2C8P10632 490 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 GCFC2P16383 781 aaKnown RBP11.77□□□□□ -0.53
LIG3-203ENST00000585370 PTPRAP18433 802 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 CLK2P49760 499 aaKnown RBP11.77□□□□□ -0.53
LIG3-203ENST00000585370 STAT2P52630 851 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 USP14P54578 494 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 PRMT2P55345 433 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 AP3B2Q13367 1082 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 SCYL3Q8IZE3 742 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 IQUBQ8NA54 791 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 RNF214Q8ND24 703 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 BIN2Q9UBW5 565 aaPredicted RBP11.77□□□□□ -0.53
LIG3-203ENST00000585370 SRRDQ9UH36 339 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 TUBE1Q9UJT0 475 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 AFG3L2Q9Y4W6 797 aa11.77□□□□□ -0.53
LIG3-203ENST00000585370 A0A0G2JLL6 359 aaPredicted RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 VWA3AA6NCI4 1184 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 POLR2DO15514 142 aaKnown RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 SMC2O95347 1197 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 SLFN14P0C7P3 912 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 BCRP11274 1271 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 OSBPP22059 807 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 ZNF165P49910 485 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 USP11P51784 963 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 NLRP12P59046 1061 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 SEMA3FQ13275 785 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 MTFR1Q15390 333 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 SHROOM1Q2M3G4 852 aaPredicted RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 ANO6Q4KMQ2 910 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 CT47A1Q5JQC4 288 aaPredicted RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 HABP4Q5JVS0 413 aaKnown RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 JAKMIP3Q5VZ66 844 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 PPP4R3AQ6IN85 833 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 PRRT2Q7Z6L0 340 aaPredicted RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 CEP57L1Q8IYX8 460 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 TRIML1Q8N9V2 468 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 RASGRP4Q8TDF6 673 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 ACER1Q8TDN7 264 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 TBCKQ8TEA7 893 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 PARK7Q99497 189 aaKnown RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 BPIFA3Q9BQP9 254 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 WDR18Q9BV38 432 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 PANK2Q9BZ23 570 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 CCSER1Q9C0I3 900 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 KIAA1683Q9H0B3 1180 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 AS3MTQ9HBK9 375 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 PICK1Q9NRD5 415 aa11.76□□□□□ -0.53
LIG3-203ENST00000585370 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.76□□□□□ -0.53
LIG3-203ENST00000585370 WDR46O15213 610 aaKnown RBP11.75□□□□□ -0.53
LIG3-203ENST00000585370 SLC26A4O43511 780 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 NEMFO60524 1076 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 CCNT1O60563 726 aaKnown RBP11.75□□□□□ -0.53
LIG3-203ENST00000585370 PPP1R11O60927 126 aaPredicted RBP11.75□□□□□ -0.53
LIG3-203ENST00000585370 OR52Z1P0C646 297 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 HOXD10P28358 340 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 MDM2Q00987 491 aaPredicted RBP11.75□□□□□ -0.53
LIG3-203ENST00000585370 PDIA5Q14554 519 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 LETM2Q2VYF4 491 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 LONRF3Q496Y0 759 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 HS1BP3Q53T59 392 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 MOXD1Q6UVY6 613 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 FASTKD5Q7L8L6 764 aaKnown RBP11.75□□□□□ -0.53
LIG3-203ENST00000585370 SAMD3Q8N6K7 520 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 SYMPKQ92797 1274 aaKnown RBP11.75□□□□□ -0.53
LIG3-203ENST00000585370 PDLIM2Q96JY6 352 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 RAB34Q9BZG1 259 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 CUEDC2Q9H467 287 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 CCDC39Q9UFE4 941 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 PRR12Q9ULL5 1215 aa11.75□□□□□ -0.53
LIG3-203ENST00000585370 SMTNL1A8MU46 457 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 GOLGA6L19H0YKK7 550 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 PIK3CDO00329 1044 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 WNT7AO00755 349 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 ADAMTS3O15072 1205 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 GRK4P32298 578 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 UBA7P41226 1012 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 PRKCZQ05513 592 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 GRIN1Q05586 938 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 POSTNQ15063 836 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 FAM83BQ5T0W9 1011 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 NT5DC1Q5TFE4 455 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms