RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NPHS1O60500 1241 aa6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 FUCA1P04066 466 aa6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 NTRK1P04629 796 aa6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 PLS3P13797 630 aa6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 TRIM26Q12899 539 aaPredicted RBP6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 USP40Q9NVE5 1235 aa6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 EMC9Q9Y3B6 208 aa6.88□□□□□ -1.31
SMCHD1-208ENST00000583344 TRBV23OR9-2A0A075B6M9 112 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 UNCXA6NJT0 531 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 ERICH6BQ5W0A0 696 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 DPF3Q92784 378 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 COPS5Q92905 334 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 PPP1R14AQ96A00 147 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 SEC16BQ96JE7 1060 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 MARCH2Q9P0N8 246 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 JAG2Q9Y219 1238 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 INPP5FQ9Y2H2 1132 aa6.87□□□□□ -1.31
SMCHD1-208ENST00000583344 NFKB2Q00653 900 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 CACNB2Q08289 660 aaPredicted RBP6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 SLC9A5Q14940 896 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 GTF2IRD2BQ6EKJ0 949 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 GTF2IRD2Q86UP8 949 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 FERMT3Q86UX7 667 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 CARFQ8N187 725 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 BVESQ8NE79 360 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 PLEKHO2Q8TD55 490 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 CPA5Q8WXQ8 436 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 DDX11Q96FC9 970 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 APBA2Q99767 749 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 SYT3Q9BQG1 590 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 BTG4Q9NY30 223 aa6.86□□□□□ -1.31
SMCHD1-208ENST00000583344 THBDP07204 575 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 PLP2Q04941 152 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 CYP4F3Q08477 520 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 SMAD4Q13485 552 aaKnown RBP6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 INF2Q27J81 1249 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 TEX2Q8IWB9 1127 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 TGIF2Q9GZN2 237 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 CCSER2Q9H7U1 834 aa6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 SPATA6Q9NWH7 488 aaPredicted RBP6.85□□□□□ -1.31
SMCHD1-208ENST00000583344 NOP56O00567 594 aaKnown RBP6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 ZBTB7AO95365 584 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 C8BP07358 591 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 POMZP3Q6PJE2 187 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 TRIM59Q8IWR1 403 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 CRACR2BQ8N4Y2 399 aaPredicted RBP6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 DDX1Q92499 740 aaKnown RBP6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 ZBTB8AQ96BR9 441 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 MMP19Q99542 508 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 STRIP2Q9ULQ0 834 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 DUSP10Q9Y6W6 482 aa6.84□□□□□ -1.31
SMCHD1-208ENST00000583344 TBX1O43435 398 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 NCAPHQ15003 741 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 UBXN11Q5T124 520 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 C6orf15Q6UXA7 325 aaPredicted RBP6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 DCP2Q8IU60 420 aaKnown RBP6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 NPLOC4Q8TAT6 608 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 FRS2Q8WU20 508 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 BTN2A2Q8WVV5 523 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 MRGPRX3Q96LB0 322 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 MRVI1Q9Y6F6 885 aa6.83□□□□□ -1.32
SMCHD1-208ENST00000583344 B2RBV5 119 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 SMAD7O15105 426 aaKnown RBP6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 SGSM2O43147 1006 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 NOBOXO60393 691 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 NAT2P11245 290 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 FPR2P25090 351 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 CNR2P34972 360 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 ZNF143P52747 638 aaPredicted RBP6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 ZFYVE27Q5T4F4 411 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 FAM26EQ8N5C1 309 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 GORASP1Q9BQQ3 440 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 NKX2-4Q9H2Z4 354 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 NTMQ9P121 344 aa6.82□□□□□ -1.32
SMCHD1-208ENST00000583344 C22orf46C9J442 243 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 ADRB1P08588 477 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 CYP2C8P10632 490 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 ATF4P18848 351 aaPredicted RBP6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 SARSP49591 514 aaKnown RBP6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 GJA9P57773 515 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 EFEMP1Q12805 493 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 LARP1BQ659C4 914 aaKnown RBP6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 GGNQ86UU5 652 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 AP5M1Q9H0R1 490 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 CYP26B1Q9NR63 512 aa6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 TMEFF2Q9UIK5 374 aaPredicted RBP6.81□□□□□ -1.32
SMCHD1-208ENST00000583344 ARNTLO00327 626 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 ETV3LQ6ZN32 361 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 STK32CQ86UX6 486 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 NLRP10Q86W26 655 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 ZNF761Q86XN6 746 aaPredicted RBP6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 CCDC103Q8IW40 242 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 LINC00482Q8N8I6 264 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 LNPKQ9C0E8 428 aa6.8□□□□□ -1.32
SMCHD1-208ENST00000583344 SMARCA5O60264 1052 aaPredicted RBP6.79□□□□□ -1.32
SMCHD1-208ENST00000583344 ITGAVP06756 1048 aa6.79□□□□□ -1.32
SMCHD1-208ENST00000583344 SPATS1Q496A3 300 aa6.79□□□□□ -1.32
SMCHD1-208ENST00000583344 CD300LDQ6UXZ3 194 aa6.79□□□□□ -1.32
SMCHD1-208ENST00000583344 DBX2Q6ZNG2 339 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms