RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 HSPA4P34932 840 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 GHRHRQ02643 423 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 FSCN1Q16658 493 aaKnown RBP27.67■■■□□ 2.02
SHMT1-206ENST00000579558 ARHGEF16Q5VV41 709 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 SYNE3Q6ZMZ3 975 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 MICU3Q86XE3 530 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 SAMD3Q8N6K7 520 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 KCNB2Q92953 911 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 VTI1AQ96AJ9 217 aa27.67■■■□□ 2.02
SHMT1-206ENST00000579558 MAP3K20Q9NYL2 800 aaKnown RBP27.67■■■□□ 2.02
SHMT1-206ENST00000579558 HMGB1P09429 215 aaKnown RBP27.66■■■□□ 2.02
SHMT1-206ENST00000579558 EIF2AK2P19525 551 aaKnown RBP27.66■■■□□ 2.02
SHMT1-206ENST00000579558 TLE2Q04725 743 aa27.66■■■□□ 2.02
SHMT1-206ENST00000579558 SRBD1Q8N5C6 995 aaKnown RBP27.66■■■□□ 2.02
SHMT1-206ENST00000579558 SCFD2Q8WU76 684 aa27.66■■■□□ 2.02
SHMT1-206ENST00000579558 IWS1Q96ST2 819 aa27.66■■■□□ 2.02
SHMT1-206ENST00000579558 PRDM5Q9NQX1 630 aaPredicted RBP27.66■■■□□ 2.02
SHMT1-206ENST00000579558 SEC63Q9UGP8 760 aaKnown RBP27.66■■■□□ 2.02
SHMT1-206ENST00000579558 ELP1O95163 1332 aa27.66■■■□□ 2.02
SHMT1-206ENST00000579558 TRIOBPQ9H2D6 2365 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 RANBP2P49792 3224 aaKnown RBP27.65■■■□□ 2.02
SHMT1-206ENST00000579558 ZEB2O60315 1214 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 BMP8BP34820 402 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 PPP2R5BQ15173 497 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 FANCBQ8NB91 859 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 PXMP2Q9NR77 195 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 SNX14Q9Y5W7 946 aa27.65■■■□□ 2.02
SHMT1-206ENST00000579558 GCOM1H8Y6P7 765 aaPredicted RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 PQBP1O60828 265 aaKnown RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 POLR2MP0CAP2 368 aa27.64■■■□□ 2.02
SHMT1-206ENST00000579558 HOXA13P31271 388 aaPredicted RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 MDM2Q00987 491 aaPredicted RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 STXBP2Q15833 593 aa27.64■■■□□ 2.02
SHMT1-206ENST00000579558 APOA5Q6Q788 366 aa27.64■■■□□ 2.02
SHMT1-206ENST00000579558 CMTR1Q8N1G2 835 aaKnown RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 JAKMIP1Q96N16 626 aaKnown RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 LBHD1Q9BQE6 289 aaPredicted RBP27.64■■■□□ 2.02
SHMT1-206ENST00000579558 PDLIM7Q9NR12 457 aa27.64■■■□□ 2.02
SHMT1-206ENST00000579558 A0A1W2PPC1 479 aa27.63■■■□□ 2.01
SHMT1-206ENST00000579558 NKRFO15226 690 aaKnown RBP eCLIP27.63■■■□□ 2.01
SHMT1-206ENST00000579558 CXCL17Q6UXB2 119 aa27.63■■■□□ 2.01
SHMT1-206ENST00000579558 OR6J1Q8NGC5 347 aa27.63■■■□□ 2.01
SHMT1-206ENST00000579558 A0A0U1RQG5 324 aaPredicted RBP27.62■■■□□ 2.01
SHMT1-206ENST00000579558 NR3C2P08235 984 aa27.62■■■□□ 2.01
SHMT1-206ENST00000579558 TXNP10599 105 aaKnown RBP27.62■■■□□ 2.01
SHMT1-206ENST00000579558 TTLL4Q14679 1199 aa27.62■■■□□ 2.01
SHMT1-206ENST00000579558 TMTC3Q6ZXV5 915 aa27.62■■■□□ 2.01
SHMT1-206ENST00000579558 UBE2OQ9C0C9 1292 aaKnown RBP27.62■■■□□ 2.01
SHMT1-206ENST00000579558 BRPF3Q9ULD4 1205 aa27.62■■■□□ 2.01
SHMT1-206ENST00000579558 CABYRO75952 493 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 CLTBP09497 229 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 CPA1P15085 419 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 FGD1P98174 961 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 BLOC1S2Q6QNY1 142 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 SEPT14Q6ZU15 432 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 ANKRD33Q7Z3H0 272 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 SH3RF1Q7Z6J0 888 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 FCHSD1Q86WN1 690 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 CCDC82Q8N4S0 544 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 LTBP2Q14767 1821 aa27.61■■■□□ 2.01
SHMT1-206ENST00000579558 DCDC2CA8MYV0 355 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 ZBTB43O43298 467 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 ARIH2O95376 493 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 CPT1AP50416 773 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 FXR1P51114 621 aaKnown RBP eCLIP27.6■■■□□ 2.01
SHMT1-206ENST00000579558 COPS5Q92905 334 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 TOX2Q96NM4 488 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 PDCD2LQ9BRP1 358 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 RBM28Q9NW13 759 aaKnown RBP27.6■■■□□ 2.01
SHMT1-206ENST00000579558 KIAA1217Q5T5P2 1943 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 MROH7Q68CQ1 1323 aa27.6■■■□□ 2.01
SHMT1-206ENST00000579558 KLF18A0A0U1RQI7 1052 aa27.59■■■□□ 2.01
SHMT1-206ENST00000579558 TRIM43BA6NCK2 446 aa27.59■■■□□ 2.01
SHMT1-206ENST00000579558 ARVCFO00192 962 aa27.59■■■□□ 2.01
SHMT1-206ENST00000579558 EPB41L2O43491 1005 aaKnown RBP27.59■■■□□ 2.01
SHMT1-206ENST00000579558 EIF3JO75822 258 aaKnown RBP27.59■■■□□ 2.01
SHMT1-206ENST00000579558 RTN1Q16799 776 aa27.59■■■□□ 2.01
SHMT1-206ENST00000579558 TRIM43Q96BQ3 446 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-206ENST00000579558 MYCLP12524 364 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-206ENST00000579558 CDK7P50613 346 aa27.58■■■□□ 2.01
SHMT1-206ENST00000579558 PGM5Q15124 567 aa27.58■■■□□ 2.01
SHMT1-206ENST00000579558 CCDC62Q6P9F0 684 aa27.58■■■□□ 2.01
SHMT1-206ENST00000579558 POLR3EQ9NVU0 708 aa27.58■■■□□ 2.01
SHMT1-206ENST00000579558 NAP1L2Q9ULW6 460 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-206ENST00000579558 hCG_1642624A0A1W2PR95 340 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 GOLGA8AA7E2F4 631 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 GOLGA8BA8MQT2 603 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 PSMA5P28066 241 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 FAAP100Q0VG06 881 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 BRDTQ58F21 947 aaPredicted RBP27.57■■■□□ 2
SHMT1-206ENST00000579558 Q6ZUG5 572 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 TMEM39AQ9NV64 488 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 SZT2Q5T011 3432 aa27.57■■■□□ 2
SHMT1-206ENST00000579558 MYL3P08590 195 aa27.56■■■□□ 2
SHMT1-206ENST00000579558 ITGA7Q13683 1181 aa27.56■■■□□ 2
SHMT1-206ENST00000579558 LY6KQ17RY6 165 aa27.56■■■□□ 2
SHMT1-206ENST00000579558 IL31RAQ8NI17 732 aa27.56■■■□□ 2
SHMT1-206ENST00000579558 CUL5Q93034 780 aa27.56■■■□□ 2
SHMT1-206ENST00000579558 CNTNAP5Q8WYK1 1306 aa27.56■■■□□ 2
SHMT1-206ENST00000579558 KIAA0355O15063 1070 aa27.55■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms