RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RAB3GAP1Q15042 981 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 PAQR3Q6TCH7 311 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 TEX2Q8IWB9 1127 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 SCUBE1Q8IWY4 988 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 Q8N1Y9 231 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 FAM84AQ96KN4 292 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 MARCH2Q9P0N8 246 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 HCFC2Q9Y5Z7 792 aa8.05□□□□□ -1.12
NUP88-213ENST00000576862 KRT1P04264 644 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 FPR2P25090 351 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 BCL6P41182 706 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 TXKP42681 527 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 RPL11P62913 178 aaKnown RBP8.04□□□□□ -1.12
NUP88-213ENST00000576862 KCNT2Q6UVM3 1135 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 THAP3Q8WTV1 239 aaPredicted RBP8.04□□□□□ -1.12
NUP88-213ENST00000576862 KISS1RQ969F8 398 aaPredicted RBP8.04□□□□□ -1.12
NUP88-213ENST00000576862 CDC6Q99741 560 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 RXFP1Q9HBX9 757 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 GPR27Q9NS67 375 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 BTG4Q9NY30 223 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 USP35Q9P2H5 1018 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 PCDHA2Q9Y5H9 948 aa8.04□□□□□ -1.12
NUP88-213ENST00000576862 ASXL2Q76L83 1435 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 ZC3H12DA2A288 527 aaKnown RBP8.03□□□□□ -1.12
NUP88-213ENST00000576862 C6orf222P0C671 652 aaPredicted RBP8.03□□□□□ -1.12
NUP88-213ENST00000576862 NR1I3Q14994 352 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 PLEKHN1Q494U1 663 aaPredicted RBP8.03□□□□□ -1.12
NUP88-213ENST00000576862 C2orf27AQ580R0 203 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 RSPO2Q6UXX9 243 aaPredicted RBP8.03□□□□□ -1.12
NUP88-213ENST00000576862 SYDE1Q6ZW31 735 aaPredicted RBP8.03□□□□□ -1.12
NUP88-213ENST00000576862 DCAF4Q8WV16 495 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 MRFAP1L1Q96HT8 127 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 SLC26A8Q96RN1 970 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 DHRS4Q9BTZ2 278 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 PHF20Q9BVI0 1012 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 CDIP1Q9H305 208 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 GCM1Q9NP62 436 aa8.03□□□□□ -1.12
NUP88-213ENST00000576862 TEX51A0A1B0GUA7 166 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 C22orf46C9J442 243 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 ABLIM1O14639 778 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 NTRK1P04629 796 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 MAPKAPK2P49137 400 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 GTF2A2P52657 109 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 SRSF3P84103 164 aaKnown RBP8.02□□□□□ -1.13
NUP88-213ENST00000576862 WWC2Q6AWC2 1192 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 STYK1Q6J9G0 422 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 CEP68Q76N32 757 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 NETO2Q8NC67 525 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 USP33Q8TEY7 942 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 KANSL2Q9H9L4 492 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 MBD1Q9UIS9 605 aaPredicted RBP8.02□□□□□ -1.13
NUP88-213ENST00000576862 PLA2G2DQ9UNK4 145 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 MRPS23Q9Y3D9 190 aaKnown RBP8.02□□□□□ -1.13
NUP88-213ENST00000576862 X6R8D5 127 aa8.02□□□□□ -1.13
NUP88-213ENST00000576862 F8W031 263 aaPredicted RBP8.01□□□□□ -1.13
NUP88-213ENST00000576862 MYO1BO43795 1136 aa8.01□□□□□ -1.13
NUP88-213ENST00000576862 SUMO1P63165 101 aaKnown RBP8.01□□□□□ -1.13
NUP88-213ENST00000576862 LSAMPQ13449 338 aa8.01□□□□□ -1.13
NUP88-213ENST00000576862 TMC6Q7Z403 805 aa8.01□□□□□ -1.13
NUP88-213ENST00000576862 SGPP1Q9BX95 441 aa8.01□□□□□ -1.13
NUP88-213ENST00000576862 CNTD2Q9H8S5 307 aa8.01□□□□□ -1.13
NUP88-213ENST00000576862 PTCH2Q9Y6C5 1203 aa8.01□□□□□ -1.13
NUP88-213ENST00000576862 ETV2O00321 342 aaPredicted RBP8□□□□□ -1.13
NUP88-213ENST00000576862 PRR5P85299 388 aa8□□□□□ -1.13
NUP88-213ENST00000576862 TMEM62Q0P6H9 643 aa8□□□□□ -1.13
NUP88-213ENST00000576862 ZC3H12BQ5HYM0 836 aaKnown RBP8□□□□□ -1.13
NUP88-213ENST00000576862 LBX2Q6XYB7 198 aa8□□□□□ -1.13
NUP88-213ENST00000576862 CABP7Q86V35 215 aa8□□□□□ -1.13
NUP88-213ENST00000576862 RIOX2Q8IUF8 465 aa8□□□□□ -1.13
NUP88-213ENST00000576862 TMEM169Q96HH4 297 aa8□□□□□ -1.13
NUP88-213ENST00000576862 PPARGC1AQ9UBK2 798 aaKnown RBP8□□□□□ -1.13
NUP88-213ENST00000576862 SIT1Q9Y3P8 196 aa8□□□□□ -1.13
NUP88-213ENST00000576862 TRAF6Q9Y4K3 522 aa8□□□□□ -1.13
NUP88-213ENST00000576862 H7BY64 318 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 SEMA7AO75326 666 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 C8AP07357 584 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 MED14OSP0DP75 135 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 GLDCP23378 1020 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 RANGAP1P46060 587 aaPredicted RBP7.99□□□□□ -1.13
NUP88-213ENST00000576862 DLG4P78352 724 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 RBM10P98175 930 aaKnown RBP7.99□□□□□ -1.13
NUP88-213ENST00000576862 SQSTM1Q13501 440 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 ZC3H14Q6PJT7 736 aaKnown RBP7.99□□□□□ -1.13
NUP88-213ENST00000576862 ZSWIM2Q8NEG5 633 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 KCNN1Q92952 543 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 TRMT2BQ96GJ1 504 aaKnown RBP7.99□□□□□ -1.13
NUP88-213ENST00000576862 CHAMP1Q96JM3 812 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 ZFYVE21Q9BQ24 234 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 CLDND1Q9NY35 253 aa7.99□□□□□ -1.13
NUP88-213ENST00000576862 C1QTNF9P0C862 333 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 FBLN1P23142 703 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 CDR1P51861 262 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 GPR85P60893 370 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 ZNF124Q15973 351 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 MROH9Q5TGP6 573 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 OLFML2BQ68BL8 750 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 BHLHE22Q8NFJ8 381 aaPredicted RBP7.98□□□□□ -1.13
NUP88-213ENST00000576862 SH3TC2Q8TF17 1288 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 PTPRN2Q92932 1015 aa7.98□□□□□ -1.13
NUP88-213ENST00000576862 IPO9Q96P70 1041 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms