RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 TLDC2A0PJX2 215 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 SRGAP3O43295 1099 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 MYO1BO43795 1136 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 FUCA1P04066 466 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 DBHP09172 617 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 GLI4P10075 376 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 TACR1P25103 407 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 GABREP78334 506 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 LSAMPQ13449 338 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 ADGRF1Q5T601 910 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 MPZL3Q6UWV2 235 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 LBX2Q6XYB7 198 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 MAMDC2Q7Z304 686 aaPredicted RBP7.08□□□□□ -1.28
NUP88-208ENST00000574087 CDIP1Q9H305 208 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 MARCH2Q9P0N8 246 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 TRAF6Q9Y4K3 522 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 PCDHA2Q9Y5H9 948 aa7.08□□□□□ -1.28
NUP88-208ENST00000574087 SDHBP21912 280 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 PDE6BP35913 854 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 GPR85P60893 370 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 TRIM61Q5EBN2 209 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 BICRALQ6AI39 1079 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 IFNL3Q8IZI9 196 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 MRPL4Q9BYD3 311 aaKnown RBP7.07□□□□□ -1.28
NUP88-208ENST00000574087 ZNF552Q9H707 407 aaPredicted RBP7.07□□□□□ -1.28
NUP88-208ENST00000574087 NCOA5Q9HCD5 579 aaKnown RBP7.07□□□□□ -1.28
NUP88-208ENST00000574087 BTG4Q9NY30 223 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 X6R8D5 127 aa7.07□□□□□ -1.28
NUP88-208ENST00000574087 A0A1W2PQJ5 194 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 OR14I1A6ND48 311 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 C22orf46C9J442 243 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 H7BY64 318 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 KCNQ2O43526 872 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 CYBBP04839 570 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 MPOP05164 745 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 FPR2P25090 351 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 YBX1P67809 324 aaKnown RBP7.06□□□□□ -1.28
NUP88-208ENST00000574087 CBX2Q14781 532 aaPredicted RBP7.06□□□□□ -1.28
NUP88-208ENST00000574087 PAQR3Q6TCH7 311 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 PRR23BQ6ZRT6 265 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 CEP68Q76N32 757 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 TEX2Q8IWB9 1127 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 GSTCDQ8NEC7 633 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.06□□□□□ -1.28
NUP88-208ENST00000574087 SLC52A2Q9HAB3 445 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 KLHL14Q9P2G3 628 aa7.06□□□□□ -1.28
NUP88-208ENST00000574087 LRRC10BA6NIK2 292 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 HRKO00198 91 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 AQP7O14520 342 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 PLD2O14939 933 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 NTRK1P04629 796 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 NR1I3Q14994 352 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 MLANAQ16655 118 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 HOMER1Q86YM7 354 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 RIOX2Q8IUF8 465 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 NLGN1Q8N2Q7 840 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 NETO2Q8NC67 525 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 SLC7A14Q8TBB6 771 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 USP33Q8TEY7 942 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 APPBP2Q92624 585 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 TRMT2BQ96GJ1 504 aaKnown RBP7.05□□□□□ -1.28
NUP88-208ENST00000574087 TMEM169Q96HH4 297 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 NSUN3Q9H649 340 aaKnown RBP7.05□□□□□ -1.28
NUP88-208ENST00000574087 FANCLQ9NW38 375 aa7.05□□□□□ -1.28
NUP88-208ENST00000574087 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.04□□□□□ -1.28
NUP88-208ENST00000574087 ENPP3O14638 875 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 PPP1R12AO14974 1030 aaPredicted RBP7.04□□□□□ -1.28
NUP88-208ENST00000574087 EFCAB14O75071 495 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 ASMTLO95671 621 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 KIZQ2M2Z5 673 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 FNDC3BQ53EP0 1204 aaKnown RBP7.04□□□□□ -1.28
NUP88-208ENST00000574087 WWC2Q6AWC2 1192 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 RPTNQ6XPR3 784 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 SYNPOQ8N3V7 929 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 CHAMP1Q96JM3 812 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 CLUHP3Q96NS8 147 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 DIRC2Q96SL1 478 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 CLDND1Q9NY35 253 aa7.04□□□□□ -1.28
NUP88-208ENST00000574087 PPARGC1AQ9UBK2 798 aaKnown RBP7.04□□□□□ -1.28
NUP88-208ENST00000574087 TMA7Q9Y2S6 64 aaKnown RBP7.04□□□□□ -1.28
NUP88-208ENST00000574087 NUDT19A8MXV4 375 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 RAB3GAP1Q15042 981 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 MROH9Q5TGP6 573 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 C16orf86Q6ZW13 317 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 CABP7Q86V35 215 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 EPB41L4BQ9H329 900 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 NDOR1Q9UHB4 597 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 SFMBT1Q9UHJ3 866 aa7.03□□□□□ -1.28
NUP88-208ENST00000574087 MYOCOSA0A1B0GUC4 107 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 ZC3H12DA2A288 527 aaKnown RBP7.02□□□□□ -1.29
NUP88-208ENST00000574087 F8W031 263 aaPredicted RBP7.02□□□□□ -1.29
NUP88-208ENST00000574087 ABLIM1O14639 778 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 PEX10O60683 326 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 RAPGEF3O95398 923 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 GRK2P25098 689 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 GRK3P35626 688 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 MAPKAPK2P49137 400 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 TCEA2Q15560 299 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 ZNF605Q86T29 641 aa7.02□□□□□ -1.29
NUP88-208ENST00000574087 SCLYQ96I15 445 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms