RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 COPS5Q92905 334 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 PIGSQ96S52 555 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 IWS1Q96ST2 819 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 MAP3K20Q9NYL2 800 aaKnown RBP17.3■□□□□ 0.36
CLN3-213ENST00000565047 ERICH2A1L162 156 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 ZEB2O60315 1214 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 PSMC6P62333 389 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 MFSD5Q6N075 450 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 Q7L0L9 218 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 SAMD3Q8N6K7 520 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 VTI1AQ96AJ9 217 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 RMDN3Q96TC7 470 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 SEZ6LQ9BYH1 1024 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 PXMP2Q9NR77 195 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 MTMR10Q9NXD2 777 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 PCDHA1Q9Y5I3 950 aa17.29■□□□□ 0.36
CLN3-213ENST00000565047 SH2B2O14492 632 aaPredicted RBP17.28■□□□□ 0.36
CLN3-213ENST00000565047 PRC1O43663 620 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 DHX16O60231 1041 aaKnown RBP17.28■□□□□ 0.36
CLN3-213ENST00000565047 RGS20O76081 388 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 CFBP00751 764 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 TXNP10599 105 aaKnown RBP17.28■□□□□ 0.36
CLN3-213ENST00000565047 FPGSQ05932 587 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 SART3Q15020 963 aaKnown RBP17.28■□□□□ 0.36
CLN3-213ENST00000565047 PPP2R5BQ15173 497 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 FAM109BQ6ICB4 259 aaPredicted RBP17.28■□□□□ 0.36
CLN3-213ENST00000565047 CATIPQ7Z7H3 387 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 DEFB123Q8N688 67 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 OR6J1Q8NGC5 347 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 VWCEQ96DN2 955 aa17.28■□□□□ 0.36
CLN3-213ENST00000565047 MPHOSPH6Q99547 160 aaKnown RBP17.28■□□□□ 0.36
CLN3-213ENST00000565047 MYH6P13533 1939 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 PNMA6FA0A0J9YX94 578 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 B4DLN1 442 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 B4GALT4O60513 344 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 NR3C2P08235 984 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 SMARCA1P28370 1054 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 MCM5P33992 734 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 LIFRP42702 1097 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 CPT1AP50416 773 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 MRPL12P52815 198 aaKnown RBP17.27■□□□□ 0.36
CLN3-213ENST00000565047 TTLL4Q14679 1199 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 STXBP2Q15833 593 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 TSGA10IPQ3SY00 556 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 RASIP1Q5U651 963 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 ZNF654Q8IZM8 581 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 TMEM87BQ96K49 555 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 PDCD2LQ9BRP1 358 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 MYL10Q9BUA6 226 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 SPZ1Q9BXG8 430 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 TRPV6Q9H1D0 765 aa17.27■□□□□ 0.36
CLN3-213ENST00000565047 SCN10AQ9Y5Y9 1956 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 EIF3JO75822 258 aaKnown RBP17.26■□□□□ 0.35
CLN3-213ENST00000565047 DDAH1O94760 285 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 EIF2AK2P19525 551 aaKnown RBP17.26■□□□□ 0.35
CLN3-213ENST00000565047 ARHGAP1Q07960 439 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 LY6KQ17RY6 165 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 VSIG10LQ86VR7 867 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 HOMER1Q86YM7 354 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 ALDH8A1Q9H2A2 487 aaPredicted RBP17.26■□□□□ 0.35
CLN3-213ENST00000565047 ANO2Q9NQ90 1003 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 POLR3EQ9NVU0 708 aa17.26■□□□□ 0.35
CLN3-213ENST00000565047 DDX41Q9UJV9 622 aaKnown RBP17.26■□□□□ 0.35
CLN3-213ENST00000565047 UMODL1Q5DID0 1318 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 BAZ2BQ9UIF8 2168 aaKnown RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 TLR3O15455 904 aaKnown RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 CSF2RAP15509 400 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 HOXA13P31271 388 aaPredicted RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 SMAD3P84022 425 aaKnown RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 EXOSC10Q01780 885 aaKnown RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 TMEM240Q5SV17 173 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 ARHGEF16Q5VV41 709 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 SGMS1Q86VZ5 419 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 RASEFQ8IZ41 740 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 TMTC2Q8N394 836 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 SRBD1Q8N5C6 995 aaKnown RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 IL31RAQ8NI17 732 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.25■□□□□ 0.353e-6■□□□□ 10.1
CLN3-213ENST00000565047 MTG1Q9BT17 334 aaPredicted RBP17.25■□□□□ 0.35
CLN3-213ENST00000565047 KIAA1217Q5T5P2 1943 aa17.25■□□□□ 0.35
CLN3-213ENST00000565047 FRMPD4Q14CM0 1322 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 CYP2C18P33260 490 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 PGM5Q15124 567 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 CASC1Q6TDU7 716 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 SEPT14Q6ZU15 432 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 KAT2BQ92831 832 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 KCNB2Q92953 911 aa17.24■□□□□ 0.35
CLN3-213ENST00000565047 EMID1Q96A84 441 aaPredicted RBP17.24■□□□□ 0.35
CLN3-213ENST00000565047 NOC4LQ9BVI4 516 aaKnown RBP17.24■□□□□ 0.35
CLN3-213ENST00000565047 KPNA6O60684 536 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 PLEKHA8P1O95397 391 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 MMP3P08254 477 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 MYL3P08590 195 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 TRAF1Q13077 416 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 NBPF20Q3BBV1 942 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 ADCK5Q3MIX3 580 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 AFG1LQ8WV93 481 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 GUCD1Q96NT3 240 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 CTAGE1Q96RT6 745 aa17.23■□□□□ 0.35
CLN3-213ENST00000565047 LRRC2Q9BYS8 371 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms