RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CDX2Q99626 313 aaPredicted RBP11.91□□□□□ -0.5
LDLR-214ENST00000560628 TTYH1Q9H313 450 aaPredicted RBP11.91□□□□□ -0.5
LDLR-214ENST00000560628 HIPK3Q9H422 1215 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 POLR3EQ9NVU0 708 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 MAD2L2Q9UI95 211 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 LCTP09848 1927 aa11.91□□□□□ -0.5
LDLR-214ENST00000560628 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 ERICH2A1L162 156 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 PALM3A6NDB9 673 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 GRXCR1A8MXD5 290 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 NKRFO15226 690 aaKnown RBP eCLIP11.9□□□□□ -0.5
LDLR-214ENST00000560628 PPP1R11O60927 126 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 EIF2AK2P19525 551 aaKnown RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 TTLL4Q14679 1199 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 LY6KQ17RY6 165 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 SLC35G1Q2M3R5 365 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 BRDTQ58F21 947 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 FAM47CQ5HY64 1035 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 ARHGEF16Q5VV41 709 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 NCOA7Q8NI08 942 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 NSUN6Q8TEA1 469 aaKnown RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 MTG1Q9BT17 334 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 NOC4LQ9BVI4 516 aaKnown RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 AMNQ9BXJ7 453 aa11.9□□□□□ -0.5
LDLR-214ENST00000560628 ALDH8A1Q9H2A2 487 aaPredicted RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 TRMT13Q9NUP7 481 aaKnown RBP11.9□□□□□ -0.5
LDLR-214ENST00000560628 OPLAHO14841 1288 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 CYP2C9P11712 490 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 GRM4Q14833 912 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 WTAPQ15007 396 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 STXBP2Q15833 593 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 NBPF20Q3BBV1 942 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 TMEM67Q5HYA8 995 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 CCDC62Q6P9F0 684 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 SKAP1Q86WV1 359 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 HOMER1Q86YM7 354 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 AFG1LQ8WV93 481 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 PIBF1Q8WXW3 757 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 MYLIPQ8WY64 445 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 MAP4K1Q92918 833 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 MTMR8Q96EF0 704 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 PIGSQ96S52 555 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 IWS1Q96ST2 819 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 SEZ6LQ9BYH1 1024 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 IL23AQ9NPF7 189 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 PCDHA1Q9Y5I3 950 aa11.89□□□□□ -0.51
LDLR-214ENST00000560628 RBM8AQ9Y5S9 174 aaKnown RBP11.89□□□□□ -0.51
LDLR-214ENST00000560628 LAMA4Q16363 1823 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 A6NJR5 290 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 DLL1O00548 723 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 ZBTB5O15062 677 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 KPNA6O60684 536 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 FGBP02675 491 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 NR3C2P08235 984 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 MYCLP12524 364 aaPredicted RBP11.88□□□□□ -0.51
LDLR-214ENST00000560628 HOXA13P31271 388 aaPredicted RBP11.88□□□□□ -0.51
LDLR-214ENST00000560628 PBX2P40425 430 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 ANTXR2P58335 489 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 SART3Q15020 963 aaKnown RBP11.88□□□□□ -0.51
LDLR-214ENST00000560628 OTOP2Q7RTS6 562 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 IGDCC4Q8TDY8 1250 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 SCLYQ96I15 445 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 ZFP91Q96JP5 570 aaPredicted RBP11.88□□□□□ -0.51
LDLR-214ENST00000560628 MAF1Q9H063 256 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 WNT8AQ9H1J5 351 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 PXMP2Q9NR77 195 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 LRRC37A2A6NM11 1700 aa11.88□□□□□ -0.51
LDLR-214ENST00000560628 CYTH3O43739 400 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 SORBS3O60504 671 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 EIF3JO75822 258 aaKnown RBP11.87□□□□□ -0.51
LDLR-214ENST00000560628 GH1P01241 217 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 SUPT20HL2P0C7V6 817 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 DNAJB2P25686 324 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 HSD17B4P51659 736 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 ARHGAP1Q07960 439 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 TROAPQ12815 778 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 PSRC1Q6PGN9 363 aaPredicted RBP11.87□□□□□ -0.51
LDLR-214ENST00000560628 CATIPQ7Z7H3 387 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 FCHSD1Q86WN1 690 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 MB21D2Q8IYB1 491 aaPredicted RBP11.87□□□□□ -0.51
LDLR-214ENST00000560628 RIOX1Q9H6W3 641 aa11.87□□□□□ -0.51
LDLR-214ENST00000560628 CXXC1Q9P0U4 656 aaPredicted RBP11.87□□□□□ -0.51
LDLR-214ENST00000560628 PNMA6FA0A0J9YX94 578 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 MMP3P08254 477 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 COL9A3Q14050 684 aaPredicted RBP11.86□□□□□ -0.51
LDLR-214ENST00000560628 GRIN2CQ14957 1233 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 RASIP1Q5U651 963 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 DEFB128Q7Z7B8 93 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 RPUSD2Q8IZ73 545 aaKnown RBP11.86□□□□□ -0.51
LDLR-214ENST00000560628 HERVK_113Q902F9 699 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 TIFAQ96CG3 184 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 PDCD2LQ9BRP1 358 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 MYL10Q9BUA6 226 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 LSG1Q9H089 658 aaKnown RBP11.86□□□□□ -0.51
LDLR-214ENST00000560628 ZNF576Q9H609 170 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 DDX41Q9UJV9 622 aaKnown RBP11.86□□□□□ -0.51
LDLR-214ENST00000560628 MRVI1Q9Y6F6 885 aa11.86□□□□□ -0.51
LDLR-214ENST00000560628 GCOM1H8Y6P7 765 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms